Polyketide synthases of Diaporthe helianthi and involvement of DhPKS1 in virulence on sunflower

Ruocco, Michelina; Baroncelli, Riccardo; Cacciola, Santa Olga; Pane, Catello; Monti, Maurilia Maria; Firrao, Giuseppe; Vergara, Mariarosaria; Magnano di San Lio, Gaetano; Vannacci, Giovanni; Scala, Felice

doi:10.1186/s12864-017-4405-z

Table 1 List of all DhPKS genes, with the exclusion of two (DhPKS11 and DhPKS35), with experimentally verified pathogenicity, virulence and effector genes from fungal, oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts, obtained by searching PHI-base (http://www.phi-base.org)

From: Polyketide synthases of Diaporthe helianthi and involvement of DhPKS1 in virulence on sunflower

PHI Closest hits (proteins)
Name	GenBank Acc. Num.	Putative protein length (aa)	Organism	Disease	Protein name	Protein ID	Identity (%)	Similarity (%)	Ref.
DhPKS1	KR153185	2501	M. oryzae	Rice blast	ACE1	Q6ZX14	33.98	50.56	[50]
			B. cinerea	Gray mould	BcBOA6	B1GVX7	34.76	53.57	[44]
			A. brassicicola	Black spot	DEP5	D2E9X0	32.68	50.45	[52]
DhPKS2	KR153184	2635	G. fujikuroi	Foolish seedling	FUM1 (FUM5)	Q9Y8A2	32.53	49.48	[66]
			C. heterostrophus	Leaf blight	PKS1	Q92217	31.58	48.37	[3]
DHPKS3	KR153183	1798	A. oligospora	Nematophagous fungus	AoMls	G1XLT2	46.59	63.93	[67]
DHPKS4	KR153182	3071	F. verticillioides	Ear and stalk rot of maize	FVEG_12528	W7NCN7	28.69	45.46	[68]
			F. graminearum	Fusarium ear blight	PKS4 (ZEA1)	Q2VLJ2	28.14	45.46	[69]
DHPKS5	KR153181	2585	C. heterostrophus	Leaf blight	PKS1	Q92217	33.22	51.15	[3]
			G. fujikuroi	Foolish seedling	FUM1 (FUM5)	Q9Y8A2	31.92	48.97	[66]
DHPKS6	KR153180	3013	M. oryzae	Rice blast	ACE1	Q6ZX14	35.17	53.24	[50]
			B. cinerea	Gray mould	BcBOA6	B1GVX7	38.13	56.32	[44]
DHPKS7	KR153179	2140	C. graminicola	maize anthracnose	CgPKS1	C9W7X1	32.98	49.38	[70]
			F. graminearum	Fusarium ear blight	PKS13 (ZEA2)	Q2VLJ3	36.24	55.66	[71]
			A. alternata	Leaf spot	ACRTS2	F8R4Y0	36.75	53.86	[63]
DHPKS8	KR153178	2193	A. alternata	Leaf spot	ACRTS2	F8R4Y0	38.87	55.41	[63]
			C. neoformans	Facultative plant and animal fungal pathogen	Cln1	J9VV14	38.57	55.52	[72]
			A. fumigatus	Respiratory disease	ALB1	O59897	38.17	56.14	[73]
			A. fumigatus	Respiratory disease	PKSP	O60026	38.08	56.09	[74]
			C. lagenarium	Anthracnose	PKS1	P79068	37.07	54.01	[62]
			E. dermatitidis	Phaeohyphomycosis	WdPKS1	Q9Y7A7	36.64	53.72	[75]
DHPKS9	KR153177	2519	G. fujikuroi	Foolish seedling	FUM1 (FUM5)	Q9Y8A2	34.21	51.88	[66]
DHPKS10	KR153176	2209	F. verticillioides	Ear and stalk rot of maize	FVEG_12528	W7NCN7	38.91	54.24	[68]
			C. heterostrophus	Leaf blight	PKS1	Q92217	38.05	54.73	[3]
DhPKS11	KR153175	171
DHPKS12	KR153174	2492	A. alternata	Leaf spot	ACRTS2	F8R4Y0	31.21	47.02	[63]
DHPKS13	KR153173	4088	M. oryzae	Rice blast	ACE1	Q6ZX14	39.13	57.03	[50]
			B. cinerea	Gray mould	BcBOA6	B1GVX7	39.88	57.66	[44]
DHPKS14	KR153172	2191	A. fumigatus	Respiratory disease	ALB1	O59897	42.51	60.58	[73]
			A. fumigatus	Respiratory disease	PKSP	O60026	42.46	60.48	[74]
			C. nicotianae	Leaf spot	CTB1	Q6DQW3	42.97	59.11	[64]
			C. sativus	Spot blotch disease	PKS1	G8DNT0	39.75	58.54	[76]
			A. alternata	Leaf spot	ACRTS2	F8R4Y0	39.62	57.97	[63]
			C. neoformans	Facultative plant and animal fungal pathogen	Cln1	J9VV14	38.06	56.65	[72]
DHPKS15 (partial)	KR153171	1613	B. cinerea	Gray mould	BcBOA6	B1GVX7	34.61	50.99	[44]
DHPKS16	KR153170	3886	M. oryzae	Rice blast	ACE1	Q6ZX14	34.17	52.24	[50]
			B. cinerea	Gray mould	BcBOA6	B1GVX7	33.69	52.09	[44]
DHPKS17	KR153169	2616	G. fujikuroi	Foolish seedling	FUM1 (FUM5)	Q9Y8A2	31.55	48.7	[66]
			A. brassicicola	Black spot	DEP5	D2E9X0	36.67	53.72	[52]
DHPKS18	KR153168	2161	F. graminearum	Fusarium ear blight	PKS13 (ZEA2)	Q2VLJ3	29.11	45.31	[71]
DHPKS19	KR153167	2647	G. fujikuroi	Foolish seedling	FUM1 (FUM5)	Q9Y8A2	32.46	50.09	[66]
DHPKS20	KR153166	1996	A. fumigatus	Respiratory disease	ALB1	O59897	44.37	60.66	[73]
DHPKS21 (partial)	KR153165	814	A. brassicicola	Black spot	DEP5	D2E9X0	41.09	57.14	[52]
DHPKS22	KR153164	2505	A. brassicicola	Black spot	DEP5	D2E9X0	32.25	50.16	[52]
DHPKS23 (partial)	KR153163	7787	B. cinerea	Gray mould	BcBOA6	B1GVX7	53.44	68.48	[37]
DHPKS24	KR153162	2545	C. heterostrophus	Leaf blight	PKS1	Q92217	32.44	50.48	[3]
DHPKS25	KR153161	2590	F. verticillioides	Ear and stalk rot of maize	FVEG_12528	W7NCN7	35.75	53.85	[68]
			F. graminearum	Fusarium ear blight	PKS4 (ZEA1)	Q2VLJ2	34.1	50.4	[71]
			C. heterostrophus	Leaf blight	PKS1	Q92217	32.44	50.48	[3]
DHPKS26	KR153160	2543	F. graminearum	Fusarium ear blight	PKS4 (ZEA1)	Q2VLJ2	36.73	53.29	[71]
			F. verticillioides	Ear and stalk rot of maize	FVEG_12528	W7NCN7	34.6	51.13	[68]
			C. heterostrophus	Leaf blight	PKS1	Q92217	36.7	52.34	[3]
DHPKS27	KR153159	2064	A. alternata	Leaf spot	ACRTS2	F8R4Y0	47.12	64.5	[63]
DHPKS28	KR153158	2169	C. lagenarium	Anthracnose	PKS1	P79068	71.73	83.2	[62]
			C. graminicola	maize anthracnose	CgPKS1	C9W7X1	32.98	49.38	[70]
			C. sativus	Spot blotch disease	PKS1	G8DNT0	47.89	65.35	[76]
			A. alternata	Leaf spot	ACRTS2	F8R4Y0	47.12	64.5	[63]
DHPKS29	KR153157	1813	P. nodorum	Septoria nodorum blotch	SnPKS19	Q0TX07	45.31	61.45	[77]
			C. graminicola	maize anthracnose	CgPKS1	C9W7X1	32.98	49.38	[70]
DHPKS30	KR153156	2624	G. fujikuroi	Foolish seedling	FUM1 (FUM5)	Q9Y8A2	41.46	57.69	[66]
			A. brassicicola	Black spot	DEP5	D2E9X0	36.4	53.12	[52]
DHPKS31	KR153155	2753	A. oligospora	Nematophagous fungus	AoMls	G1XLT2	46.59	63.93	[67]
DHPKS32	KR153154	2484	M. oryzae	Rice blast	ACE1	Q6ZX14	39.74	56.57	[50]
			B. cinerea	Gray mould	BcBOA6	B1GVX7	37.15	55.25	[44]
DHPKS33	KR153153	2254	G. fujikuroi	Foolish seedling	FUM1 (FUM5)	Q9Y8A2	28.72	45.55	[66]
DHPKS34	KR153152	2365	C. heterostrophus	Southern corn leaf blight	PKS2	Q6RKG2	32.00	49.87	[1]
			C. heterostrophus	Leaf blight	PKS1	Q92217	36.83	54.98	[3]
			F. verticillioides	Ear and stalk rot of maize	FVEG_12528	W7NCN7	36.16	53.24	[68]
			F. graminearum	Fusarium ear blight	PKS4 (ZEA1)	Q2VLJ2	35.14	52.15	[71]
DhPKS35	KR153151	441
DHPKS36	KR153150	2422	A. brassicicola	Black spot	DEP5	D2E9X0	51.48	66.93	[52]
DHPKS37	KR153149	2597	C. heterostrophus	Leaf blight	PKS1	Q92217	34.46	53.1	[3]
			G. fujikuroi	Foolish seedling	FUM1 (FUM5)	Q9Y8A2	33.81	51.81	[66]
DHPKS38	KR153148	2652	C. heterostrophus	Leaf blight	PKS1	Q92217	32.04	49.81	[3]
DHPKS39	KR153147	2511	G. fujikuroi	Foolish seedling	FUM1 (FUM5)	Q9Y8A2	38.11	56.07	[66]
DHPKS40	KR153146	2380	A. brassicicola	Black spot	DEP5	D2E9X0	30.69	47.58	[52]
			F. verticillioides	Ear and stalk rot of maize	FVEG_12528	W7NCN7	33.2	50.3	[68]

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