Skip to main content
Fig. 2 | BMC Genomics

Fig. 2

From: Pacbio sequencing of copper-tolerant Xanthomonas citri reveals presence of a chimeric plasmid structure and provides insights into reassortment and shuffling of transcription activator-like effectors among X. citri strains

Fig. 2

A composite plasmid genome comparison figure was generated using CGView comparison tool after performing a BLASTN analysis of plasmid 2 of Xc-03-1638-1-1 against pXAC33 and pXAC64 plasmids of X. citri str. 306. Each plasmid genome mapping to plasmid 2 is represented as a colored ring with a solid color representing greater than 99% sequence identity and the lighter color showing 99% sequence identity. The TALEs, transposases and genes involved in replication and stability are labeled. The outer two rings indicate ORFs encoded in plasmid P2 of Xc-03-1638-1-1 (annotated using prokka). The inner two rings, with brown ring representing pXAC64 and green ring representing pXAC33 plasmids, are aligned against plasmid P2 of Xc-03-1638-1-1 using 99% sequence identity and E-value of 0.001 as a cut-off

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us