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Fig. 4 | BMC Genomics

Fig. 4

From: Pacbio sequencing of copper-tolerant Xanthomonas citri reveals presence of a chimeric plasmid structure and provides insights into reassortment and shuffling of transcription activator-like effectors among X. citri strains

Fig. 4

A composite plasmid genome comparison figure was generated using CGView comparison tool after performing a BLASTN analysis of plasmid 2 of Xc-03-1638-1-1 against LM180.2, pLM180.3 and pLM180.4 plasmids of X. citri str. LM180, isolated from same infected grapefruit sample as Xc-03-1638-1-1. Each plasmid genome mapping to plasmid 2 is represented as a colored ring with a solid color representing greater than 99% sequence identity and the lighter color showing 99% sequence identity. The TALEs, and transposases are labeled. The outer two rings indicate ORFs encoded in plasmid P2 of Xc-03-1638-1-1 (annotated using prokka, dark purple color). The inner three rings, with brown ring representing pLM180.2, green ring representing pLM180.3 and light purple ring representing pLM180.4 plasmids, are aligned against plasmid P2 of Xc-03-1638-1-1 using 99% sequence identity and E-value of 0.001 as a cut-off

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