Identification of 74 cytochrome P450 genes and co-localized cytochrome P450 genes of the CYP2K, CYP5A, and CYP46A subfamilies in the mangrove killifish Kryptolebias marmoratus

Lee, Bo-Young; Kim, Duck-Hyun; Kim, Hui-Su; Kim, Bo-Mi; Han, Jeonghoon; Lee, Jae-Seong

doi:10.1186/s12864-017-4410-2

Table 1 CYP genes identified in K. marmoratus

From: Identification of 74 cytochrome P450 genes and co-localized cytochrome P450 genes of the CYP2K, CYP5A, and CYP46A subfamilies in the mangrove killifish Kryptolebias marmoratus

Clan	Family	CYP genes	ORF length (bp)	No. of Exons	Accession No.	Scaffold ID	Scaffold length (bp)	Start	End	Gene size (bp)	Strand
Clan 2	Family 1	CYP1A	1566	7	MF326082	NW_016094354	1,459,910	968,181	965,957	2224	–
		CYP1B1	1617	2	MF326083	NW_016094495	528,655	243,436	240,336	3100	–
		CYP1C1	1578	1	MF326084	NW_016094241	11,400,209	2,151,289	2,149,703	1586	–
		CYP1C2	1575	1	MF326085	NW_016094241	11,400,209	2,147,560	2,145,986	1574	–
		CYP1D1	1587	7	MF326086	NW_016094279	3,616,124	1,463,808	1,459,468	4340	–
	Family2	CYP2AD12	1482	9	MF326087	NW_016094248	6,824,951	6,408,131	6,411,923	3792	+
		CYP2AD12iso	1482	9	MF326088	NW_016094248	6,824,951	6,413,510	6,417,086	3576	+
		CYP2K38	1521	9	MF326089	NW_016095595	18,832	6285	9742	3457	+
		CYP2K39	1506	9	MF326090	NW_016094323	2,188,509	12,490	15,110	2620	+
		CYP2K40	1506	9	MF326091	NW_016094323	2,188,509	17,216	20,474	3258	+
		CYP2K41	1506	9	MF326092	NW_016094323	2,188,509	22,083	25,074	2991	+
		CYP2K42	1503	9	MF326093	NW_016094323	2,188,509	27,002	31,421	4419	+
		CYP2K43	1506	9	MF326094	NW_016094323	2,188,509	32,776	35,523	2747	+
		CYP2K44	1503	9	MF326095	NW_016094323	2,188,509	39,265	42,491	3226	+
		CYP2K45	1503	9	MF326096	NW_016094323	2,188,509	45,259	48,543	3284	+
		CYP2K46	1488	9	MF326097	NW_016094323	2,188,509	57,299	59,861	2562	+
		CYP2K47	1527	9	MF326098	NW_016094341	1,713,428	484,375	479,276	5099	–
		CYP2K48	1419	9	MF326099	NW_016094341	1,713,428	477,446	472,119	5327	–
		CYP2K49	1515	9	MF326100	NW_016094341	1,713,428	499,574	492,275	7299	–
		CYP2K50	1521	9	MF326101	NW_016094341	1,713,428	466,024	461,828	4196	–
		CYP2K51	1500	9	MF326102	NW_016094323	2,188,509	50,504	53,526	3022	+
		CYP2K52	1350	9	MF326103	NW_016094323	2,188,509	3986	9356	5371	+
		CYP2N22	1488	9	MF326104	NW_016094248	6,824,951	6,424,268	6,427,747	3479	+
		CYP2N23	1494	9	MF326105	NW_016094248	6,824,951	6,419,087	6,422,845	3758	+
		CYP2P16	1497	9	MF326106	NW_016094248	6,824,951	6,406,727	6,401,086	5641	–
		CYP2P17	1497	9	MF326107	NW_016094248	6,824,951	6,399,381	6,393,620	5761	–
		CYP2P18	1497	9	MF326108	NW_016094248	6,824,951	6,392,341	6,385,519	6822	–
		CYP2P19	1497	9	MF326109	NW_016094248	6,824,951	6,379,679	6,384,024	4345	+
		CYP2P20	1506	9	MF326110	NW_016094248	6,824,951	6,373,446	6,378,689	5243	+
		CYP2R1	1560	5	MF326111	NW_016094245	8,651,236	4,619,472	4,622,983	3511	+
		CYP2U1	1602	5	MF326112	NW_016094240	11,911,191	4,154,835	4,159,576	4741	+
		CYP2X24	1461	11	MF326113	NW_016094701	214,116	47,337	53,345	6008	+
		CYP2X25	1461	11	MF326114	NW_016096522	9746	N/A	5537	N/A	+
		CYP2X26	1479	11	MF326115	NW_016094701	214,116	56,638	71,729	≈ 15,091	+
		CYP2X27	1458	11	MF326116	NW_016094701	214,116	35,726	45,002	≈ 9276	+
		CYP2Y9	1476	9	MF326117	NW_016094386	1,104,698	13,051	9566	3485	–
		CYP2Z6	1515	9	MF326118	NW_016094248	6,824,951	3,433,325	3,429,696	3629	–
		CYP2Z6-like*	1500	9	MF326119	NW_016094248	6,824,951	3,433,325	3,429,696	3629	–
	Family17	CYP17A1	1548	8	MF326142	NW_016094300	2,667,381	1,094,110	1,104,539	10,429	+
		CYP17A2	1539	9	MF326143	NW_016095167	43,372	7511	12,189	4678	+
	Family21	CYP21A1	1572	12	MF326147	NW_016094332	1,971,969	1,370,794	1,374,238	3444	+
Clan3	Family3	CYP3A176	1530	13	MF326120	NW_016094240	11,911,191	8,795,434	8,800,292	4858	+
		CYP3A177*	1548	12	MF326121	NW_016094240	11,911,191	8,795,434	8,799,969	4535	+
		CYP3B10	1485	13	MF326122	NW_016094243	9,347,475	2,955,181	2,949,946	5235	–
	Family5	CYP5A1	1701	13	MF326127	NW_016094285	3,446,830	2,031,496	2,035,382	3886	+
		CYP5A2	1662	13	MF326128	NW_016094285	3,446,830	2,037,833	2,044,122	≈ 6289	–
		CYP5A3	1656	13	MF326129	NW_016094285	3,446,830	2,046,601	2,051,404	4803	+
		CYP5A4	1722	13	MF326130	NW_016094285	3,446,830	2,052,641	2,057,508	4867	+
		CYP5A6	1668	13	MF326131	NW_016094285	3,446,830	2,068,924	2,077,955	9031	+
Clan4	Family4	CYP4F128	1617	13	MF326123	NW_016094474	596,310	272,969	277,073	4104	+
		CYP4T17	1539	12	MF326124	NW_016094273	4,016,886	3,420,192	3,425,137	4945	+
		CYP4T18*	1575	10	MF326125	NW_016094273	4,016,886	3,420,192	3,425,137	4945	+
		CYP4V2	1623	11	MF326126	NW_016094240	11,911,191	7,707,782	7,701,568	6214	–
Clan7	Family7	CYP7A1	1539	8	MF326132	NW_016094845	138,999	31,992	26,587	5405	–
		CYP7C1	1563	5	MF326133	NW_016096556	9473	9282	6496	2786	–
	Family8	CYP8A1	1446	10	MF326134	NW_016094274	3,987,237	3,283,074	3,288,823	5749	+
		CYP8A2	1467	10	MF326135	NW_016094250	6,612,770	5,812,657	5,818,781	6124	+
		CYP8A2-like*	1521	10	MF326136	NW_016094250	6,612,770	5,810,209	5,818,781	8572	+
		CYP8B1	1530	1	MF326137	NW_016094328	2,090,648	988,883	990,412	1529	+
		CYP8B14	1530	1	MF326138	NW_016094328	2,090,648	995,773	997,302	1529	+
Clan19	Family19	CYP19A1	1551	9	MF326144	NW_016094822	150,677	61,672	N/A	N/A	+
		CYP19A2	1518	10	MF326145	NW_016094246	8,378,829	5,605,491	5,608,355	2864	+
Clan20	Family20	CYP20A1	1389	13	MF326146	NW_016094638	271,067	153,258	157,717	4459	+
Clan26	Family26	CYP26A1	1467	7	MF326149	NW_016094402	996,503	529,169	537,817	8648	+
		CYP26B1	1539	7	MF326150	NW_016094716	201,440	39,690	10,153	≈ 29,537	–
		CYP26C1	1608	7	MF326151	NW_016094465	632,235	493,674	502,741	9067	+
Clan46	Family46	CYP46A1	1512	15	MF326156	NW_016094252	6,456,249	3,898,087	3,893,214	4873	–
		CYP46A2	1515	15	MF326157	NW_016094252	6,456,249	3,614,329	3,621,112	6783	+
		CYP46A4	1527	15	MF326158	NW_016094252	6,456,249	3,606,320	3,612,983	6663	+
		CYP46A5	1515	15	MF326159	NW_016094252	6,456,249	3,589,333	3,605,213	15,880	+
Clan51	Family51	CYP51A1	1497	10	MF326160	NW_016094242	10,095,097	8,228,424	8,223,720	4704	–
Clanmt	Family11	CYP11A1	1572	9	MF326140	NW_016094246	8,378,829	4,196,019	4,193,094	2925	–
		CYP11C1V1	1632	9	MF326141	NW_016094273	4,016,886	9463	16,380	6917	+
	Family24	CYP24A1	1542	11	MF326148	NW_016094251	6,557,273	3,641,436	3,635,899	5537	–
	Family27	CYP27A1	1593	9	MF326152	NW_016094376	1,154,157	145,481	140,290	5191	–
		CYP27A3	1614	11	MF326153	NW_016094297	2,892,702	2,218,077	2,237,829	≈ 19,752	+
		CYP27B1	1566	9	MF326154	NW_016094274	3,987,237	1,230,560	1,227,105	3455	–
		CYP27C1	1623	9	MF326155	NW_016094245	8,651,236	41,377	52,309	≈ 10,932	+

*Alternatively spliced transcript of the gene directly above
N/A, the exact location of the gene could not be determined because the gene was mapped to the end of the scaffold
≈ Approximate genome size because the scaffold contains ‘Ns’ in the gene area

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ISSN: 1471-2164

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