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Table 3 The most downregulated variables in the transgenic PttSCAMP3 RNAi lines from the OnPLS analysis

From: A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of​ ​​Populus​​ ​trees

Transcript Protein Metabolite (LC-MS) Metabolite (GC-MS)
Potri.002G066100 (Alba DNA/RNA-binding protein) 0.9 Potri.006G079700 (PREFOLDIN 1) 0.7 260.0366@7.6459966 0.8 Fructose-6-Phosphate 0.7
Potri.002G026600 (Regulator of chromosome condensation) 0.9 Potri.008G061300 (RAB GTPase homolog A2B) 0.6 170.0909@6.5109987 0.8 Succinic acid 0.6
Potri.008G014700 (calcium dependent protein kinase 1) 0.9 Potri.001G304700 (Ribosomal protein S5 domain 2-like superfamily protein) 0.6 ‘UDP-galactose 0.8 Threonic acid 0.6
Potri.003G098200 (extra-large GTP-binding protein 3) 0.9 Potri.005G108100 (aconitase 1) 0.6 2-cis,4-trans-xanthoxin 0.7 Adenosine 0.5
Potri.018G044300 0.9 Potri.016G032500 (Single-stranded nucleic acid binding R3H protein) 0.6 312.2202@7.9389973 0.7 Malic acid 0.5
Potri.001G306700 (Protein of unknown function (DUF1278)) 0.8 Potri.008G060000 (eukaryotic translation initiation factor 3G1) 0.6 iso-erythritol 0.7 Caffeic acid 0.5
Potri.001G428100 (NB-ARC disease resistance protein) 0.8 Potri.004G070000 (UDP-glucosyl transferase 88A1) 0.5 263.2075@8.526 0.7   
Potri.007G002400 (cytochrome P450, family 716, subfamily A,) 0.8 Potri.001G400900 (similar to cytidylyltransferase family) 0.5 86.041@0.7590002 0.7   
Potri.006G093800 (Inositol phosphorylceramide synthase 2) 0.8 Potri.001G464500 (germin-like protein 2) 0.5 280.1638@7.9479985 0.7   
Potri.005G181800 (Protein kinase superfamily protein) 0.8 Potri.019G050500 (Protein kinase superfamily protein) 0.5 438.3488@9.589997 0.7   
Potri.001G435700 (endoribo-nuclease L-PSP protein) 0.8 Potri.003G168500 0.5 157.0447@2.569 0.7   
Potri.015G079500 (scramblase-related) 0.8 Potri.013G062500 0.5 5-O-Caffeoylshikimic acid 0.7   
Potri.011G100900 (ARF-GAP domain 13) 0.8 Potri.015G090900 (26S proteasome, regulatory subunit Rpn7) 0.5 392.0447@0.6760002 0.6   
Potri.006G187500 (Calcineurin-like metallo-phosphoesterase) 0.8 Potri.009G120500 (regulatory particle triple-A ATPase 4A) 0.5 98.0651@4.285999 0.6   
Potri.014G148800 (DNA topoisomerase, type IA, core) 0.8 Potri.010G069900 (Ribosomal protein L14) 0.5 404.0859@3.440001 0.6   
Potri.016G018700 0.8 Potri.011G110900 (general regulatory factor 9) 0.5 157.0442@2.1259997 0.6   
Potri.006G085400 (aminoacyl-tRNA and biotin synthetase) 0.8 Potri.006G073200 (Ribosomal protein L30/L7 family protein) 0.5 243.1821@6.7790008 0.6   
Potri.001G420400 (SMAD/FHA domain-containing protein) 0.8 Potri.012G062600 (ribulose-bisphosphate carboxylase) 0.4 310.1765@7.268003 0.6   
Potri.017G082800 0.8 Potri.002G082101 0.4 103.0391@0.7649997 0.6   
Potri.011G169200 0.8 Potri.002G057300 (Pleckstrin homology (PH) domain-containing protein) 0.4 422.2356@9.213004 0.6   
Potri.003G098100 (GHMP kinase family protein) 0.8 Potri.002G182500 (CARBON CATABOLITE REPRESSOR PROTEIN 4) 0.4 537.1221@1.2070005 0.6   
Potri.002G006700 (MLO family protein) 0.8 Potri.008G012400 (FASCICLIN-like arabinogalactan protein 17 precursor) 0.4 537.1187@1.2060003 0.6   
Potri.008G159700 (Pyruvate kinase family protein) 0.8 Potri.018G078200 (ankyrin repeat family protein) 0.4 Succinic acid 0.6   
Potri.004G106200 (phosphoglycerate mutase) 0.8 Potri.002G045700 (tryptophan synthase alpha chain) 0.4 148.0429@0.859 0.6   
Potri.011G167000 (amino acid permease 7) 0.8 Potri.006G275000 (H(+)-ATPase 5) 0.4 464.1305@4.291 0.6   
Potri.001G004600 (tubulin α-3) 0.8 Potri.003G081800 (RAS 5) 0.4 464.1145@4.291 0.6   
Potri.002G171800 (cytochrome P450, family 703, subfamily A) 0.8 Potri.001G194000 (Ribosomal L28e protein family) 0.4 7-Hydroxyflavone 0.6   
Potri.005G028900 (Rab escort prot) 0.8 Potri.003G004100 (RAB GTPase 11C) 0.4 305.9969@0.57099974 0.6   
Potri.T060400 (NB-ARC disease resistance protein) 0.8 Potri.T106200 (Peroxidase superfamily protein) 0.4 252.0948@6.714998 0.6   
Potri.001G132900 (ENHANCED DISEASE RESISTANCE 2) 0.8 Potri.007G014300 (Histone superfamily protein) 0.4 419.9017@0.41500008 0.6   
  1. The variables are listed in descending order of statistical significance (p(CORR) from the OnPLS analysis. The p(CORR) value is depicted next to each variable. The transcript and protein annotations are according to JGI V3.0. LC-MS metabolites without annotations could not be identified and are listed as mass@retention time. Full datasets are listed in Additional files 3,4,5 and 6