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Table 3 Relationship between the H e estimates between WGS and the array data sets

From: Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies

 

rs

Slope

Array_all

0.956

2.233

Array_MAF5

0.957

2.321

GG

0.985 a

2.770

GG_MAF5

0.984

2.790

Pruned

0.973

2.150 a

Pruned_MAF5

0.974

2.340

Pruned_GG

0.983

2.675

Pruned_GG_MAF5

0.983

2.717

  1. r s – Spearman’s rank correlation. Slope – the slope of regression line when the H e estimates of array data are regressed against those of WGS data
  2. aNumbers in bold face represent the best value in the column. These results are based on 39 populations
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BMC Genomics

ISSN: 1471-2164

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