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Table 4 The relationship between the F ST estimates of the WGS and array data

From: Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies

  WGS
  Slope R2 Regression constant Standard error (SE) Residual variance
Array_all 1.179 0.954 −0.028 0.009 0.0001
Array_MAF5 1.183 0.954 −0.027 0.010 0.0001
GG 1.197 0.959 a −0.028 0.009 0.0001
GG_MAF5 1.197 0.959 a −0.028 0.009 0.0001
Pruned 1.023 a 0.937 −0.017 0.010 0.0001
Pruned_MAF5 1.033 0.939 −0.016 0.010 0.0001
Pruned_GG 1.055 0.940 −0.018 0.010 0.0001
Pruned _GG_MAF5 1.057 0.941 −0.017 0.010 0.0001
  1. aNumbers in bold face represent the best value in the column. R2 – regression coefficient. These results are based on 39 populations