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Table 5 Frobenius (F) distances between distance matrices of WGS and array data

From: Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies

 

Array_all

Array_MAF5

GG

GG_MAF5

Pruned

Pruned_MAF5

Pruned_GG

Pruned_GG_MAF5

Array_all

5.312 ± 0.001

       

Array_MAF5

0.591

5.889 ± 0.001

      

GG

1.239

0.685

6.501 ± 0.001

     

GG_MAF5

1.434

0.868

0.200

6.700 ± 0.001

    

Pruned

2.230

2.810

3.397

3.596

3.152a ± 0.001

   

Pruned_MAF5

1.332

1.886

2.447

2.644

0.971

4.115 ± 0.001

  

Pruned_GG

1.034

1.530

2.038

2.232

1.417

0.462

4.548 ± 0.002

 

Pruned_GG_MAF5

0.811

1.216

1.676

1.867

1.800

0.836

0.329

4.931 ± 0.002

  1. The diagonal is a mean of the F distance between the array data set and 100 WGS replicates with the standard errors (SE)
  2. aNumbers in bold face represent the best value in the column
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BMC Genomics

ISSN: 1471-2164

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