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Table 5 Frobenius (F) distances between distance matrices of WGS and array data

From: Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies

  Array_all Array_MAF5 GG GG_MAF5 Pruned Pruned_MAF5 Pruned_GG Pruned_GG_MAF5
Array_all 5.312 ± 0.001        
Array_MAF5 0.591 5.889 ± 0.001       
GG 1.239 0.685 6.501 ± 0.001      
GG_MAF5 1.434 0.868 0.200 6.700 ± 0.001     
Pruned 2.230 2.810 3.397 3.596 3.152a ± 0.001    
Pruned_MAF5 1.332 1.886 2.447 2.644 0.971 4.115 ± 0.001   
Pruned_GG 1.034 1.530 2.038 2.232 1.417 0.462 4.548 ± 0.002  
Pruned_GG_MAF5 0.811 1.216 1.676 1.867 1.800 0.836 0.329 4.931 ± 0.002
  1. The diagonal is a mean of the F distance between the array data set and 100 WGS replicates with the standard errors (SE)
  2. aNumbers in bold face represent the best value in the column