From: Patterns of variation in cis-regulatory regions: examining evidence of purifying selection
Category Code | Category Description |
---|---|
CDS | Protein coding sequence regions |
UTR | Protein coding untranslated regions |
INTRON | Protein coding intronic regions |
DHS | DNase hypersensitive regions |
Genome Segmentations | |
PROMOTER_w_TSS | Predicted promoter region including transcription start site |
PROMOTER_FLANK | Predicted promoter flanking region |
ENHANCER | Predicted enhancer |
W_ENHANCER | Predicted weak enhancer |
CTCF_ENRICHED | CTCF enriched elements |
Transcription Factor Binding Sites | |
TFGEN | General transcription factors |
TFCHR | Chromatin-modifying transcription factors |
TFSS | Sequence-specific transcription factors |
BHLH_FAM | Basic helix-loop-helix protein family |
BZIP_FAM | Basic leucine zipper family |
HMD_FAM | Homeobox-domain family |
NR_FAM | Nuclear hormone receptor family |
P53_FAM | P53-like transcription factor family |
WHTH_FAM | Winged helix-turn-helix family |
ZNF_FAM | Zinc finger protein family |
Reference Regions | |
NON_ANN | Non-annotated regions at least 200 kb away from CDS |
WHOLE_GENOME | Whole genome average |