Table 3 In each cancer type, the table shows the number of differentially expressed genes (DEGs) obtained by differential expression analysis from TCGA data, and for those genes the table shows the number of cancer driver DEGs and % of cancer driver DEGs with respect to 1322 driver genes
From: Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis
Cancer Type | TCGA ID Data | DEGs | Cancer driver DEGs | # cancer driver DEGs/# of driver genes (%) |
|---|---|---|---|---|
Bladder Urothelial Carcinoma | BLCA | 2937 | 217 | 16% |
Breast invasive carcinoma cancer | BRCA | 3390 | 249 | 19% |
Colon adenocarcinoma | COAD | 3788 | 289 | 22% |
Esophageal carcinoma | ESCA | 2525 | 229 | 17% |
Head and Neck squamous cell carcinoma | HNSC | 2973 | 225 | 17% |
Kidney Chromophobe | KICH | 4355 | 330 | 25% |
Kidney renal clear cell carcinoma | KIRC | 3618 | 307 | 23% |
Kidney renal papillary cell carcinoma | KIRP | 3748 | 294 | 22% |
Liver hepatocellular carcinoma | LIHC | 3043 | 238 | 18% |
Lung adenocarcinoma | LUAD | 3498 | 257 | 19% |
Lung squamous cell carcinoma | LUSC | 4984 | 399 | 30% |
Prostate adenocarcinoma | PRAD | 1860 | 113 | 8% |
Rectum adenocarcinoma | READ | 3628 | 273 | 20% |
Stomach adenocarcinoma | STAD | 2622 | 200 | 15% |
Thyroid carcinoma | THCA | 1994 | 130 | 9% |
Uterine Corpus Endometrial Carcinoma | UCEC | 4183 | 332 | 25% |