Skip to main content

Table 3 In each cancer type, the table shows the number of differentially expressed genes (DEGs) obtained by differential expression analysis from TCGA data, and for those genes the table shows the number of cancer driver DEGs and % of cancer driver DEGs with respect to 1322 driver genes

From: Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis

Cancer Type TCGA ID Data DEGs Cancer driver DEGs # cancer driver DEGs/# of driver genes (%)
Bladder Urothelial Carcinoma BLCA 2937 217 16%
Breast invasive carcinoma cancer BRCA 3390 249 19%
Colon adenocarcinoma COAD 3788 289 22%
Esophageal carcinoma ESCA 2525 229 17%
Head and Neck squamous cell carcinoma HNSC 2973 225 17%
Kidney Chromophobe KICH 4355 330 25%
Kidney renal clear cell carcinoma KIRC 3618 307 23%
Kidney renal papillary cell carcinoma KIRP 3748 294 22%
Liver hepatocellular carcinoma LIHC 3043 238 18%
Lung adenocarcinoma LUAD 3498 257 19%
Lung squamous cell carcinoma LUSC 4984 399 30%
Prostate adenocarcinoma PRAD 1860 113 8%
Rectum adenocarcinoma READ 3628 273 20%
Stomach adenocarcinoma STAD 2622 200 15%
Thyroid carcinoma THCA 1994 130 9%
Uterine Corpus Endometrial Carcinoma UCEC 4183 332 25%