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Table 1 Information on the complete genomes used in this study

From: Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains

Species Strain Sequencing Technology Assembler Coverage GenBank assembly accession
Bacteroides dorei HS1_L_1_B_010 PacBio Celera 306 GCA_000738045
Bacteroides dorei HS1_L_3_B_079 PacBio Celera 370 GCA_000738065
Bacteroides dorei HS2_L_2_B_045b PacBio Celera 185 GCA_001274835
Bacteroides dorei CL03T12C01 PacBio SMRT Analysis 193 GCA_001640865
Bacteroides fragilis NCTC 9343 Sanger Phrap 10 GCA_000025985
Bacteroides fragilis 638R Sanger Phrap 9 GCA_000210835
Bacteroides fragilis BE1 Illumina + Nanopore SPAdes 68 + 8 GCA_001286525
Bacteroides fragilis BOB25 454 + IonTorrent + Sanger Newbler 29 GCA_000965785
Bacteroides fragilis S14 Illumina CLC-GW + SPAdes 73 GCA_001682215
Bacteroides fragilis YCH46 Sanger Pherd/Phrap 10 GCA_000009925
Bacteroides ovatus ATCC 8483 PacBio + Illumina HGAP + Celera 350 GCA_001314995
Bacteroides ovatus V975 454 + Sanger Newbler 23 GCA_900095495
Bacteroides thetaiotaomicron 7330 PacBio + Illumina HGAP + Celera 395 GCA_001314975
Bacteroides thetaiotaomicron VPI-5482 Sanger Phrap 7 GCA_000011065
Porphyromonas gingivalis 381 454 + Sanger Velvet + Newbler 50 GCA_001314265
Porphyromonas gingivalis A7436 454 + Sanger Velvet + Newbler 57 GCA_001263815
Porphyromonas gingivalis A7A1-28 454 + Sanger Velvet + Newbler 94 GCA_001444325
Porphyromonas gingivalis AJW4 454 + Sanger Velvet + Newbler 60 GCA_001274615
Porphyromonas gingivalis ATCC 33277 Sanger Pherd/Phrap 9.5 GCA_000010505
Porphyromonas gingivalis TDC60 454 + Sanger Newble + Phrap 9 + 7 GCA_000270225
Porphyromonas gingivalis W83 Sanger TIGR Assembler 8 GCA_000007585
Tannerella forsythia 3313 Sanger + 454 + Illumina Newbler 21 GCA_001547875
Tannerella forsythia 92A2 Sanger Celera 12 GCA_000238215
Tannerella forsythia KS16 Sanger + 454 + Illumina Newbler 23 GCA_001547855