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Fig. 2 | BMC Genomics

Fig. 2

From: The genome sequence of the commercially cultivated mushroom Agrocybe aegerita reveals a conserved repertoire of fruiting-related genes and a versatile suite of biopolymer-degrading enzymes

Fig. 2

Putative homologs of agaricomycete fruiting-related genes in the genome of A. aegerita AAE-3 were identified by the basic local alignment search tool (BLAST; https://blast.ncbi.nlm.nih.gov/Blast.cgi) using published amino acid sequences of these genes from A. aegerita SM51 (=WT-1), Coprinopsis cinerea okayama7#130, C. cinerea AmutBmut pab1–1 and Schizophyllum commune H4–8 as query sequences (Additional file 6). Annotations of known functional elements and domains of the respective amino acid sequences were derived from InterProScan (http://www.ebi.ac.uk/interpro) and the NCBI Conserved Domain Database (CDD; https://www.ncbi.nlm.nih.gov/cdd). The scale bar represents 100 amino acids and the following abbreviations of domain names were used: ARID (AT-rich interaction domain) type DNA-binding domain; PAS (Per-Arnt-Sim) domain; HMG (high mobility group) box motif; FAD (flavin adenine dinucleotide); Fungal TF-MHR (transcription factor regulatory middle homology region)

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BMC Genomics

ISSN: 1471-2164

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