Table 12 The qRT-PCR validation of selected genes in RNA-seq data
Gene | ID | Species | Log2FC in qPCR | Log2FC in RNA-seq |
|---|---|---|---|---|
XET25 | TRINITY_DN127707_c4_g25_i2 | A. scabra | 4.57 | 6.60 |
GDSL esterase | TRINITY_DN125263_c6_g4_i1 | A. scabra | 4.68 | 8.66 |
Dirigent protein 5 | TRINITY_DN89062_c0_g1_i1 | A. scabra | 3.21 | 4.30 |
P5CR | TRINITY_DN120079_c1_g2_i1 | A. scabra | 1.12 | 1.82 |
Cytochrome P450 77A3 | TRINITY_DN133782_c0_g2_i3 | A. scabra | 3.68 | 6.45 |
HMGB7 | TRINITY_DN119330_c0_g1_i2 | A. scabra | 2.82 | 5.13 |
DREB1A | TRINITY_DN125656_c0_g3_i2 | A. scabra | 2.37 | 3.43 |
Pearson’s correlation (A. scabra) | 0.95 |  | ||
 Glycine cleavage system H protein | TRINITY_DN88310_c1_g1_i3 | A. stolonifera | −1.98 | −2.49 |
 GAPDH A | TRINITY_DN108728_c4_g45_i1 | A. stolonifera | −2.31 | −3.09 |
 Peroxidase 4 | TRINITY_DN101060_c1_g1_i1 | A. stolonifera | −3.28 | −9.13 |
 Beta-glucosidase 3 | TRINITY_DN113597_c1_g1_i1 | A. stolonifera | −2.53 | −8.22 |
 DIVARICATA | TRINITY_DN89810_c0_g3_i1 | A. stolonifera | 3.27 | 5.44 |
Pearson’s correlation (A. stolonifera) | 0.93 |  | ||