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Table 2 Data used in this study

From: Quantitative or qualitative transcriptional diagnostic signatures? A case study for colorectal cancer

GEO Acc

Platform

Sample sizea

Normal

IBD

Tumor

Training

 GSE32323

Affymetrix GPL570

17

 

17

 GSE22598

Affymetrix GPL570

17

 

17

 GSE41328

Affymetrix GPL570

10

 

10

 GSE4107

Affymetrix GPL570

10

 

12

 GSE4183

Affymetrix GPL570

8

15

15

 GSE18105

Affymetrix GPL570

17

 

94

 GSE12251

Affymetrix GPL570

 

23

 

 GSE13367

Affymetrix GPL570

 

16

 

 GSE9452

Affymetrix GPL570

 

8

 

 GSE16879

Affymetrix GPL570

6

61

 

 GSE35144

Affymetrix GPL570

  

27

 GSE35896

Affymetrix GPL570

  

62

 GSE33113

Affymetrix GPL570

6

 

90

 GSE37178

Illumina GPL6947

  

84

 GSE48634

Illumina GPL10558

69

102

 

Validation

 GSE9348

Affymetrix GPL570

12

 

70

 GSE23878

Affymetrix GPL570

24

 

35

 GSE47908

Affymetrix GPL570

15

39

 

 GSE36807

Affymetrix GPL570

7

28

 

 GSE27854

Affymetrix GPL570

  

115

 GSE22619

Affymetrix GPL570

10

10

 

 GSE21510

Affymetrix GPL570

25

 

123

 GSE17536

Affymetrix GPL570

  

177

 GSE14580

Affymetrix GPL570

6

24

 

 GSE8671

Affymetrix GPL570

32

 

32

 GSE9254

Affymetrix GPL570

19

  

 GSE20916

Affymetrix GPL570

44

 

91

 GSE53306

Illumina GPL10558

12

28

 

 GSE31279

Illumina GPL6104

42

 

44

 GSE33126

Illumina GPL6947

9

 

9

 GSE68570

Illumina GPL10558

5

6

 

 GSE26305

Illumina GPL6884

2

2

 

 GSE56789

Illumina GPL10558

40

  

 GSE43841

Illumina GPL14951

6

  

 GSE50760b

Illumina GPL11154

18

 

36

 GSE72819b

Illumina GPL11154

 

73

 

 TCGA_coadb,c

IlluminaHiSeq_RNASeqV2

41

 

285

  1. Notes:
  2. aEmpty cells indicate that there is no sample in the corresponding category
  3. bThese samples are measured by the RNA-sequencing platform
  4. cDenotes the colorectal adenocarcinoma sample from TCGA
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BMC Genomics

ISSN: 1471-2164

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