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Table 2 Data used in this study

From: Quantitative or qualitative transcriptional diagnostic signatures? A case study for colorectal cancer

GEO Acc Platform Sample sizea
Normal IBD Tumor
Training
 GSE32323 Affymetrix GPL570 17   17
 GSE22598 Affymetrix GPL570 17   17
 GSE41328 Affymetrix GPL570 10   10
 GSE4107 Affymetrix GPL570 10   12
 GSE4183 Affymetrix GPL570 8 15 15
 GSE18105 Affymetrix GPL570 17   94
 GSE12251 Affymetrix GPL570   23  
 GSE13367 Affymetrix GPL570   16  
 GSE9452 Affymetrix GPL570   8  
 GSE16879 Affymetrix GPL570 6 61  
 GSE35144 Affymetrix GPL570    27
 GSE35896 Affymetrix GPL570    62
 GSE33113 Affymetrix GPL570 6   90
 GSE37178 Illumina GPL6947    84
 GSE48634 Illumina GPL10558 69 102  
Validation
 GSE9348 Affymetrix GPL570 12   70
 GSE23878 Affymetrix GPL570 24   35
 GSE47908 Affymetrix GPL570 15 39  
 GSE36807 Affymetrix GPL570 7 28  
 GSE27854 Affymetrix GPL570    115
 GSE22619 Affymetrix GPL570 10 10  
 GSE21510 Affymetrix GPL570 25   123
 GSE17536 Affymetrix GPL570    177
 GSE14580 Affymetrix GPL570 6 24  
 GSE8671 Affymetrix GPL570 32   32
 GSE9254 Affymetrix GPL570 19   
 GSE20916 Affymetrix GPL570 44   91
 GSE53306 Illumina GPL10558 12 28  
 GSE31279 Illumina GPL6104 42   44
 GSE33126 Illumina GPL6947 9   9
 GSE68570 Illumina GPL10558 5 6  
 GSE26305 Illumina GPL6884 2 2  
 GSE56789 Illumina GPL10558 40   
 GSE43841 Illumina GPL14951 6   
 GSE50760b Illumina GPL11154 18   36
 GSE72819b Illumina GPL11154   73  
 TCGA_coadb,c IlluminaHiSeq_RNASeqV2 41   285
  1. Notes:
  2. aEmpty cells indicate that there is no sample in the corresponding category
  3. bThese samples are measured by the RNA-sequencing platform
  4. cDenotes the colorectal adenocarcinoma sample from TCGA