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Table 1 Description of Gopherus polyphemus samples by clinical status and diploid genotypes at several bases along the gene LOC101950941 on NCBI contig NW_007281632.1

From: Identifying genome-wide immune gene variation underlying infectious disease in wildlife populations – a next generation sequencing approach in the gopher tortoise

Sample

Clinical status

NW_007281632.1 Bases

53,575

53,576

53,577

53,578

53,579

FC19

Non-clin

A,A

A,A

T,T

A,A

AG,AG

OLD77

Non-clin

A,A

A,A

T,T

A,G

AG,AG

CF53

Non-clin

A,A

A,A

T,T

A,A

AG,AG

CF69

Non-clin

A,A

AT,AT

G,G

A,A

A,A

FC58

Non-clin

A,A

A,AT

G,T

A,G

A,AG

OLD106

Non-clin

A,A

AT,AT

G,G

A,A

A,A

CF72

Clin

A,A

AT,AT

G,T

A,A

A,A

CF80

Clin

A,A

AT,AT

G,G

A,A

A,A

CF90

Clin

A,A

AT,AT

G,G

A,A

A,A

CF219

Clin

A,A

AT,AT

G,G

A,A

A,A

FC13

Clin

A,A

AT,AT

G,G

A,A

A,A

FC15

Clin

A,A

AT,AT

G,G

A,A

A,A

FC47

Clin

A,A

AT,AT

G,G

A,A

A,A

OLD65

Clin

A,A

AT,AT

G,G

A,A

A,A

OLD92

Clin

A,A

AT,AT

G,G

A,A

A,A

OLD107

Clin

A,A

AT,AT

G,G

A,A

A,A

  1. Non-clin for tortoises that were never observed with nasal discharge during the duration of the field study and Clin for tortoises that had at least one incident of mild to severe nasal discharge
  2. CF Cecil Field, FC Fort Cooper, and OLD Oldenburg