The aquatic animals’ transcriptome resource for comparative functional analysis

BMC Genomics

Table 1 Gene annotation statistics in dbATM

Species	No. of transcripts	No. of proteins	No. of UniGene	No. of homologous genes
Anguilla japonica	99,696	38,815	13,600	9893
Astyanax mexicanus	59,723	23,085	10,443	7838
Clupea harengus	28,360	15,975	7713	5773
Crassostrea gigas	47,472	33,491	1149	377
Fundulus grandis	32,405	17,620	7388	4707
Gasterosteus aculeatus	77,510	43,170	14,035	6394
Ictalurus punctatus	57,435	28,850	13,400	10,452
Lateolabrax japonicus	27,075	15,130	6502	4227
Microphysogo biobrevirostris	50,827	31,923	14,839	11,295
Mytilus galloprovincialis	10,738	5944	815	141
Neocaridina denticulate	59,513	23,033	6593	1406
Pandalus latirostris	39,062	11,894	4127	1065
Penaeus monodon	36,979	14,740	4796	1162
Planorbarius corneus	61,364	20,951	3802	1004
Plecoglossus altivelis	43,524	22,836	9115	6544
Poecilia formosa	47,579	22,728	8271	3836
Poecilia mexicana	39,598	27,485	10,322	6423
Protopterus annectens	26,187	14,498	6050	2463
Pundamilia nyererei	19,205	13,762	5287	2749
Sinocyclocheilus angustiporus	51,104	41,391	11,505	8168
Sinocyclocheilus anophthalmus	81,704	48,526	13,583	10,452
Tetraodon nigroviridis	53,394	32,410	11,781	4238
Total	1,023,379	533,127	185,166	19,363^a

^aThe total number of homologous gene groups show here is the real homologous gene groups in the database. Not the summation from individual species

ISSN: 1471-2164