Table 1 Edit distance from the predicted donor sequence to the true donor. The average distance between the true donors and the reference is 95193,9
From: Towards pan-genome read alignment to improve variation calling
Pan-genome reference size | ||||
|---|---|---|---|---|
1 | 20 | 50 | 100 | |
GATK | 74695.9 | - | - | - |
MSA base + GATK | - | 2885.5 | 1956.9 | 1204.7 |
MSA chic + GATK | - | 1349.3 | 1117.4 | 1099.3 |
Graph +GATK | - | 3230.4 | 3336.8 | 2706.9 |