Skip to main content

Table 1 Edit distance from the predicted donor sequence to the true donor. The average distance between the true donors and the reference is 95193,9

From: Towards pan-genome read alignment to improve variation calling

  Pan-genome reference size
  1 20 50 100
GATK 74695.9 - - -
MSA base + GATK - 2885.5 1956.9 1204.7
MSA chic + GATK - 1349.3 1117.4 1099.3
Graph +GATK - 3230.4 3336.8 2706.9