From: Towards pan-genome read alignment to improve variation calling
Pan-genome reference size
1
20
50
100
GATK
74695.9
-
MSA base + GATK
2885.5
1956.9
1204.7
MSA chic + GATK
1349.3
1117.4
1099.3
Graph +GATK
3230.4
3336.8
2706.9