Table 2 Precision and recall of our method MSA chic compared to GATK
From: Towards pan-genome read alignment to improve variation calling
Measure | GATK | 20 | 50 | 100 |
|---|---|---|---|---|
SNV precision | 0.992161 | 0.998585 | 0.998863 | 0.998773 |
SNV recall | 0.904897 | 0.997098 | 0.998695 | 0.999072 |
Indel precision | 0.364853 | 0.996514 | 0.99731 | 0.997778 |
Indel recall | 0.0624981 | 0.982659 | 0.985723 | 0.985958 |