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Table 1 The distribution of patients and samples.

From: Identification of usual interstitial pneumonia pattern using RNA-Seq and machine learning: challenges and solutions

Representative histopathology types

Training set

Test set

 

# samples

# patients

# patients

UIP Total

212 (60%)

53 (59%)

23 (47%)

 Usual Interstitial pneumonia (UIP)

136

34

11

 Difficult UIP

40

11

7

 Favor UIP

22

5

4

 UIP (lower lobe) + Nonspecific interstitial pneumonia (NSIP) (upper lobe)

5

1

 

 Difficult UIP (lower lobe) + NSIP (upper lobe)

4

1

 

 UIP (lower lobe) + Pulmonary hypertension (upper lobe)

5

1

 

 Favor HP (lower lobe) + Difficult UIP (upper lobe)

  

1

Non-UIP Total

142 (40%)

37 (41%)

26 (53%)

 Respiratory bronchiolitis (RB); Smoking-related interstitial fibrosis

26

7

7

 Hypersensitivity pneumonitis; Favor HP

19

4

4

 Sarcoidosis

17

5

4

 NSIP; Cellular NSIP; Favor NSIP

18

5

3

 Diffuse alveolar damage; DAD with hemosiderosis

2

1

2

 Amyloid or light chain deposition

  

1

 Bronchiolitis

12

3

1

 Eosinophilic pneumonia (EP)

5

1

1

 Exogenous lipid pneumonia

  

1

 Organizing alveolar hemorrhage

  

1

 Organizing pneumonia (OP)

29

7

1

 Pneumocystis pneumonia (PP)

4

1

 

 Emphysema

10

3

 

Total

354

90

49