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Fig. 3 | BMC Genomics

Fig. 3

From: Features of the organization of bread wheat chromosome 5BS based on physical mapping

Fig. 3

Synteny of wheat (CS) 5BS, wild wheat (T. dicoccoides) 5B, Brachypodium Bd4, rice Os12 and sorghum Sb8, based on BLAST. Selected parts are: 0–322 Mb of dic5B, 0–8.1 Mb of Bd4, 8.9–22.9 of Os12, 34.1–55.4 of Sb8. Wheat 5BS is shown schematically (to demonstrate the distribution of markers along dic5B only: no splitting on resulted physical scaffolds/contigs, position of markers does not exactly correspond to physical position on CS 5BS). Markers from CS BLASTed to T. dicoccoides are based on BAC-end sequences (e-value cutoff 1e-150). Markers to connect dic5B, Bd4 and Os12 are based on CDS sequences of Brachypodium (e-value cutoff 1e-10). Markers to connect Os12 and Sb8 are based on CDS sequences of rice (e-value cutoff 1e-10)

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