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Table 1 Filtering steps with number of remaining SNPs

From: A SNP panel for identification of DNA and RNA specimens

Filter steps

Number of SNPs

RNA

DNA

Total SNPs

507,975

19,562,004

Genotype calling rate > 90%

4876

Biallelic loci contain three genotypes

4672

MAF > 0.2

1263

3,077,712

Common SNPs between DNA and RNA

1023

HW p-value > 0.01

100

LD < 0.01 and Ignore SNPs located in HLA loci

50