Genome-wide DNA Methylation analysis in response to salinity in the model plant caliph medic (Medicago truncatula)

Table 3 The number of DMRs observed after salinity treatment

Sequence contexts	All sites	Total significant^*	Hypomethylated^*	Strongly hypomethylated^*	Hypermethylated^*	Strongly hypermethylated^*	Total strongly methylated DMRs^*
mCG-exon	158,359	48,104	27,910	3077	15,067	2050	5127
mCHG-exon	180,623	53,794	28,921	1352	21,319	2202	3554
mCHH-exon	191,379	77,208	46,557	617	29,205	829	1446
mCG-intron	100,915	28,258	16,345	2359	8150	1404	3763
mCHG-intron	127,043	36,217	19,031	1487	13,478	2221	3708
mCHH-intron	140,256	60,857	36,648	1060	21,903	1246	2306
mCG- promoter	52,208	20,188	12,085	150	7790	163	313
mCHG- promoter	52,350	19,109	11,923	153	6911	122	275
mCHH- promoter	52,968	31,209	23,239	57	7870	43	100
Total	1,056,101	374,944	222,659	10,312	131,693	10,280	20,592

Significantly DMRs were calculated based on p < 0.001, FDR ≤ 0.05, and indicated by the asterisks (*). DMRs were identified using 50-bp as a comparison window

ISSN: 1471-2164