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Table 2 Distribution of RE-regulated genes among replicons

From: Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbiotic evolutionary history

Genome/replicon

CDS

Up-regulated

Down-regulated

% of up

% of down

BP

8436

824

796

9.7

9.4

 BURPHK1 (chr)

3301

226

429

6.8

13.0

 BURPHK2 (chr)

2666

311

219

11.7

8.2

 BURPHP1 (pl)

1840

158

136

8.6

7.4

 BURPHP2 (pSym)

629

129

12

22.9

2.1

CT

5982

236

186

3.9

3.1

 RALTA_A (chr)

3145

120

109

3.8

3.5

 RALTA_B (chr)

2254

101

64

4.5

2.8

 pRALTA (pSym)

583

15

13

2.6

2.2

RM

6545

167

70

2.6

1.1

 BN77_v1 (chr)

4158

100

43

2.4

1.0

 BN77_p1 (pl)

1540

47

26

3.1

1.67

 BN77_p2 (pSym)

576

19

0

3.3

0

 BN77_p3 (pl)

132

0

0

0

0

 BN77_p4 (pl)

114

1

0

0.9

0

 BN77_p5 (pl)

12

0

0

0

0

 BN77_p6 (pl)

13

0

1

0

7.7

  1. BP B. phymatum STM815 genome, CT C. taiwanensis LMG19424 genome, RM R. mesoamericanum STM3625 genome, Chr chromosome, pl plasmid, pSym symbiotic plasmid. Replicon names are according to their genbank annotation