Skip to main content

Table 3 Lentil–A. lentis transcriptome assembly details

From: Transcriptome profiling of lentil (Lens culinaris) through the first 24 hours of Ascochyta lentis infection reveals key defence response genes

Feature Value
Assembled contigs (n) 317,412
Longest contig (bp) 11,358
Mean contig (bp) 457
Contig N50 (bp) 497
Contig N90 (bp) 236
Contig E96N50 (bp) 827
E96 contigs (n) 44,007
Total contig length (bp) 1.45×108
Assembly GC content (%) 41.74
Total reads (n) 7.247×108
Avg. sequence retention ratea (%) 89.63
  1. aRaw sequenced reads which passed quality control measures as determined by FastQC