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Table 4 Transcript and open reading frame annotation

From: Transcriptome profiling of lentil (Lens culinaris) through the first 24 hours of Ascochyta lentis infection reveals key defence response genes

Annotation

Occurrences (#)

Rate (%)

Transcripts:a

317,412

100

NCBI nta

223,246

70.3

UniRef90a

138,131

43.5

ORFs:b

106,754

100

NCBI nra

93,077

62.4

SwissProta

52,452

49.1

Pfamc

60,404

56.6

KEGGa

39,919

37.4

GOa

34,937

32.7

  1. aBlast based annotation was considered as significant with a BitScore >100
  2. bORFs predicted by TransDecoder
  3. cHMM-predicted Pfam protein domains were considered as significant with FullSeqScore and FullDomainScore >20
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BMC Genomics

ISSN: 1471-2164

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