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Table 2 MiRNAs varying in expression in primary cultures of skeletal muscle cells isolated from semitendinosus muscle of both beef breed bulls (HER and LIM), when compared with the dairy breed (HF; the reference)

From: Breed-dependent microRNA expression in the primary culture of skeletal muscle cells subjected to myogenic differentiation

No.

Systematic name

p (Corr)

FC (HER vs. HF)

Log FC (HER vs. HF)

Regulation (HER&LIM vs. HF)

FC (LIM vs. HF)

Log FC (LIM vs. HF)

Active Sequence

miRBase Accession No.

1

bta-miR-139

3.07E-13

123.08

6.94

up

126.11

6.98

ACTGGAGACACGTGC

MIMAT0003788

2

bta-miR-2469

1.07E-03

83.81

6.39

up

11.25

3.49

AAGCCGCAGGCCC

MIMAT0012059

3

bta-miR-486

2.06E-03

51.74

5.69

up

35.07

5.13

CTCGGGGCAGCTCA

MIMAT0009329

4

bta-miR-2439-3p

6.58E-03

31.43

4.97

up

7.98

3.00

TCTGCCTACCTGTCTTC

MIMAT0012014

5

bta-miR-449a

4.82E-02

21.21

4.41

up

10.53

3.40

ACCAGCTAACAATACACTGC

MIMAT0009320

6

bta-miR-503-5p

1.26E-02

15.69

3.97

up

15.71

3.97

CAGTACTGTTCCCGC

MIMAT0025557

7

bta-miR-1

1.87E-06

12.44

3.64

up

14.67

3.87

ATACATACTTCTTTACATTCC

MIMAT0009214

8

bta-miR-133a

1.68E-06

11.63

3.54

up

12.57

3.65

CAGCTGGTTGAAGGGGAC

MIMAT0009225

9

bta-miR-206

1.07E-05

11.60

3.54

up

13.36

3.74

CCACACACTTCCTTAC

MIMAT0009260

10

bta-miR-133b

5.70E-06

11.53

3.53

up

12.12

3.60

TAGCTGGTTGAAGGGGACC

MIMAT0009226

11

bta-miR-542-5p

2.59E-02

8.77

3.13

up

25.04

4.65

CTCGTGACATGATGATC

MIMAT0013594

12

bta-miR-128

2.59E-02

4.51

2.17

up

4.78

2.26

AAAGAGACCGGTTCACTGT

MIMAT0003541

13

bta-miR-660

5.18E-04

2.49

1.32

up

2.26

1.18

CAGCTCCGATATGCAA

MIMAT0004344

14

bta-miR-378b

2.00E-03

2.42

1.28

up

2.38

1.25

GCCTTCTGACTCCAAG

MIMAT0025535

15

bta-miR-378c

4.33E-03

2.25

1.17

up

2.18

1.13

ACTTCTGACTCCAAGTC

MIMAT0025551

16

bta-miR-30a-5p

6.14E-03

2.14

1.10

up

2.51

1.33

AGCTTCCAGTCGAGG

MIMAT0003841

17

bta-miR-30f

1.45E-02

2.14

1.10

up

2.86

1.52

AGCTGAGAGTGTAGGGT

MIMAT0009282

18

bta-miR-9

2.77E-02

−40.65

−5.35

down

−16.45

−4.04

TCATACAGCTAGATAACCA

MIMAT0009389

19

bta-miR-29b

2.08E-03

−18.13

−4.18

down

−4.24

−2.08

AAACACTGATTTCAAATGGT

MIMAT0003828

20

bta-miR-31

1.99E-03

−16.57

−4.05

down

−213.81

−7.74

AGCTATGCCAGCATCTT

MIMAT0003548

21

bta-miR-194

4.25E-02

−14.83

−3.89

down

−2.55

−1.35

TCCACATGGAGTTGCT

MIMAT0009254

22

bta-miR-145

3.22E-02

−3.38

−1.76

down

−2.82

−1.5

AGGGATTCCTGGGAAAAC

MIMAT0003542

23

bta-miR-222

4.74E-02

−2.53

−1.34

down

−2.12

−1.08

ACCCAGTAGCCAG

MIMAT0003530

  1. FC fold change, HF Holstein-Friesian, HER Hereford, LIM Limousine; FDR ≤ 0.05; FC ≥ 2.0; n = 4 (see statistical analysis)
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BMC Genomics

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