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Table 3 Top 50 transcripts significantly upregulated (enriched) in GFP+ (rods) vs GFP- retinal cell populations

From: Transcripts within rod photoreceptors of the Zebrafish retina

Name

Description

logFC

FDR

gc2

guanylyl cyclase 2 [Source:ZFIN;Acc:ZDB-GENE-011128-8]

3.032892

5.22E-22

esrrd

estrogen-related receptor delta [Source:ZFIN;Acc:ZDB-GENE-040616-3]

3.642435

8.52E-17

zgc:112,334

zgc:112,334 [Source:ZFIN;Acc:ZDB-GENE-050809-120]

3.829432

3.64E-16

gngt1

guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7596]

2.959265

4.60E-16

arhgap29a

Rho GTPase activating protein 29a [Source:ZFIN;Acc:ZDB-GENE-030131-9510]

2.653423

8.20E-16

kitb

kit receptor b [Source:ZFIN;Acc:ZDB-GENE-050916-2]

2.782837

1.06E-15

si:dkey-204f11.59

si:dkey-204f11.59 [Source:ZFIN;Acc:ZDB-GENE-040724-220]

3.212857

2.27E-15

ajap1

adherens junctions associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-041210-353]

2.499397

7.05E-15

OSBPL1A (2 of 2)

oxysterol binding protein-like 1A [Source:HGNC Symbol;Acc:16,398]

2.427894

7.09E-15

pde6g

phosphodiesterase 6G, cGMP-specific, rod, gamma [Source:ZFIN;Acc:ZDB-GENE-030904-1]

3.045885

9.01E-15

UBAP1L (1 of 2)

ubiquitin associated protein 1-like [Source:HGNC Symbol;Acc:40,028]

2.868683

9.01E-15

rcvrna

recoverin a [Source:ZFIN;Acc:ZDB-GENE-050913-106]

2.719941

5.43E-14

rom1b

retinal outer segment membrane protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1073]

2.85896

5.78E-14

rorb

RAR-related orphan receptor B [Source:ZFIN;Acc:ZDB-GENE-061204-2]

2.48207

6.19E-14

tmtops2a

teleost multiple tissue opsin 2a [Source:ZFIN;Acc:ZDB-GENE-130129-3]

2.265541

1.05E-13

cerkl

ceramide kinase-like [Source:ZFIN;Acc:ZDB-GENE-070410-38]

2.181324

1.11E-13

cobl

cordon-bleu homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-091020-11]

2.417617

1.19E-13

hcn3

hyperpolarization activated cyclic nucleotide-gated potassium channel 3 [Source:ZFIN;Acc:ZDB-GENE-060503-193]

3.197947

1.51E-13

zgc:162,144

zgc:162,144 [Source:ZFIN;Acc:ZDB-GENE-030131-7630]

2.775518

1.70E-13

gnb1b

guanine nucleotide binding protein (G protein), beta polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2855]

2.767042

1.70E-13

unc119.2

unc-119 homolog 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7635]

2.116224

1.79E-13

PTPDC1 (1 of 3)

protein tyrosine phosphatase domain containing 1 [Source:HGNC Symbol;Acc:30,184]

3.253732

2.91E-13

pdca

phosducin a [Source:ZFIN;Acc:ZDB-GENE-031023-1]

2.797727

3.06E-13

rom1a

retinal outer segment membrane protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1765]

3.176656

3.68E-13

kcnv2a

potassium channel, subfamily V, member 2a [Source:ZFIN;Acc:ZDB-GENE-091117-27]

2.625431

4.38E-13

rho

rhodopsin [Source:ZFIN;Acc:ZDB-GENE-990415-271]

3.214731

4.63E-13

cplx4c

complexin 4c [Source:ZFIN;Acc:ZDB-GENE-101018-1]

2.863052

7.98E-13

samd11

sterile alpha motif domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-060428-2]

2.708617

9.40E-13

BX248120.1

Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F7S5]

2.586515

1.34E-12

saga

S-antigen; retina and pineal gland (arrestin) a [Source:ZFIN;Acc:ZDB-GENE-040426-1538]

3.089512

1.44E-12

arhgef10lb

Rho guanine nucleotide exchange factor (GEF) 10-like b [Source:ZFIN;Acc:ZDB-GENE-090313-222]

2.476543

1.60E-12

guca1a

guanylate cyclase activator 1A [Source:ZFIN;Acc:ZDB-GENE-011128-5]

2.765826

1.68E-12

si:dkeyp-41f9.3

si:dkeyp-41f9.3 [Source:ZFIN;Acc:ZDB-GENE-091118-56]

2.849587

1.72E-12

TDRD7B

Tudor domain-containing protein 7B [Source:UniProtKB/Swiss-Prot;Acc:E7FDW8]

2.840789

2.06E-12

PLCH2 (1 of 2)

phospholipase C, eta 2 [Source:HGNC Symbol;Acc:29,037]

2.020111

2.30E-12

cabp4

calcium binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-081104-291]

2.513244

2.77E-12

guca1b

guanylate cyclase activator 1B [Source:ZFIN;Acc:ZDB-GENE-011128-6]

2.703103

2.78E-12

grk1a

G protein-coupled receptor kinase 1 a [Source:ZFIN;Acc:ZDB-GENE-050823-1]

2.930581

1.10E-11

gnb1a

guanine nucleotide binding protein (G protein), beta polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-030131-823]

2.886447

1.19E-11

slc6a15

solute carrier family 6 (neutral amino acid transporter), member 15 [Source:ZFIN;Acc:ZDB-GENE-050420-93]

2.779643

1.45E-11

ppdpfa

pancreatic progenitor cell differentiation and proliferation factor a [Source:ZFIN;Acc:ZDB-GENE-030219-204]

2.669857

1.71E-11

pde6b

phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421–2]

3.049742

2.01E-11

znf536

zinc finger protein 536 [Source:ZFIN;Acc:ZDB-GENE-030616-624]

2.683055

2.19E-11

SUSD3

sushi domain containing 3 [Source:HGNC Symbol;Acc:28,391]

2.124055

2.28E-11

gnat1

guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 Source:ZFIN;Acc:ZDB-GENE-011128-11]

2.967409

3.45E-11

sagb

S-antigen; retina and pineal gland (arrestin) b [Source:ZFIN;Acc:ZDB-GENE-050913-98]

3.155676

3.69E-11

asmt

acetylserotonin O-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-080220-43]

1.844975

4.41E-11

pfkfb4l

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4, like [Source:ZFIN;Acc:ZDB-GENE-031031-4]

1.93027

4.63E-11

alpl

alkaline phosphatase, liver/bone/kidney [Source:ZFIN;Acc:ZDB-GENE-040420-1]

2.701265

5.22E-11

slc24a1

solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 [Source:ZFIN;Acc:ZDB-GENE-060503-191]

2.88482

7.45E-11