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Table 3 Expression profile (FPKM) of transcription factors obtained in the functional analysis of differentially expressed genes from Natura and Sinatra fruit before (fresh harvested, FH) and after 14 days of storage at 20 °C and 4 °C

From: Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity

TF family ID Description Natura Sinatra
FH 20 °C 4 °C FH 20 °C 4 °C
MYB CUUC76408 Transcription factor MYB3-like 3.66 3.51 16.73 7.48 11.55 78.99
CUUC60565 Transcription factor MYB21-like 67.90 2.01 79.86 63.86 0.97 88.15
CUUC61101 MYB-like transcription factor 0.56 1.97 27.34 0.58 0.49 13.62
CUUC107223 MYB transcription factor 43.98 16.70 4.35 35.69 27.19 7.48
CUUC92574 MYB transcription factor 27.24 10.09 0.96 62.02 44.99 0.65
CUUC105130 MYB transcription factor 0.55 9.12 0.28 2.64 49.64 0.63
CUUC114817 MYB transcription factor MYB6-like 15.93 128.73 2.10 19.16 42.95 3.15
CUUC114902 Transcription factor MYB21-like 27.37 11.41 0.29 21.23 7.16 0.25
CUUC99695 Transcription factor MYB44-like 109.74 164.22 28.68 168.20 642.78 21.07
CUUC100605 Transcription factor MYB44-like 12.21 57.39 5.90 27.76 61.65 4.84
CUUC96330 Transcription factor MYB44-like 9.40 14.13 0.83 24.65 65.87 0.83
CUUC100606 Transcription factor MYB44-like 33.63 214.78 17.02 65.88 171.28 21.33
CUUC100844 Transcription factor MYB86-like 212.66 70.42 15.06 89.09 42.66 8.88
CUUC61032 MYB-like transcription factor 1 9.91 14.79 2.41 2.90 10.70 2.62
CUUC88157 MYB-related protein 315-like 42.22 6.72 0.09 23.19 2.69 0.20
CUUC62256 MYB-related protein 306-like 16.92 20.38 6.74 19.27 49.50 0.82
CUUC91200 MYB-related protein 306-like 165.85 202.64 48.94 86.80 134.76 40.70
CUUC97744 MYB-related protein 308-like 17.43 11.96 1.80 8.88 11.43 1.74
CUUC90701 Transcription repressor MYB6 49.44 78.17 12.15 18.50 78.11 8.59
CUUC104651 Transcription factor MYB1R1-like 4.07 5.66 6.33 10.71 49.89 2.45
CUUC107116 Transcription factor MYB1R1-like 271.52 71.70 204.51 281.76 92.69 170.24
CUUC97743 Transcription factor MYB76-like 0.37 0.16 61.85 0.00 0.04 0.00
MYC CUUC104046 Transcription factor MYC2-like 19.01 52.12 13.70 27.43 34.69 10.84
CUUC97393 Transcription factor MYC2-like 0.00 1.65 1.49 0.00 5.43 0.00
CUUC97395 Transcription factor MYC2-like 0.62 4.07 3.42 1.06 11.91 1.87
CUUC97396 Transcription factor MYC2-like 1.63 15.37 6.45 3.73 34.58 3.20
AP2/EREBP CUUC85063 Ethylene-responsive element binding protein (RAP2.3) 6.83 4.75 40.84 11.00 21.25 93.89
CUUC104934 AP2/ERF domain-containing transcription factor 13.54 8.61 144.59 20.40 171.93 55.08
CUUC92545 Floral homeotic protein APETALA 2-like 8.78 8.18 1.94 10.96 4.75 2.41
CUUC60589 Ethylene-responsive transcription factor 1a–like 19.45 74.32 11.80 36.44 232.63 10.58
CUUC60504 Ethylene-responsive transcription factor 3-like 46.24 156.62 37.86 75.04 564.86 24.47
CUUC80448 Ethylene-responsive transcription factor 4-like 4.51 21.21 0.84 21.32 318.13 0.38
CUUC80117 Ethylene-responsive transcription factor ABR1-like 1.72 9.76 0.00 0.78 100.83 0.10
CUUC86480 Ethylene-responsive transcription factor ERF025-like 1.00 2.79 0.14 1.75 69.38 0.00
CUUC60600 Ethylene-responsive transcription factor ERF061-like 10.21 6.20 0.12 9.39 40.49 0.11
CUUC113307 Ethylene-responsive transciptional coactivator-like protein 6.14 41.76 13.51 2.45 12.01 3.73
CUUC85491 Ethylene-responsive transcription factor 4-like 54.18 10.44 14.05 105.17 57.68 2.81
CUUC100239 Ethylene-responsive transcription factor 5-like 144.65 269.58 104.81 144.26 264.43 60.98
CUUC128676 Ethylene-responsive transcription factor ERF025-like 0.00 0.61 0.00 0.00 34.17 0.00
CUUC67060 Ethylene-responsive transcription factor ERF098-like 2.43 4.96 4.16 3.55 17.70 2.29
CUUC92773 C-repeat binding factor 14.79 14.92 15.58 17.02 329.14 2.41
WRKY CUUC78817 WRKY transcription factor 64.33 32.44 0.12 21.16 85.43 0.21
CUUC78015 WRKY transcription factor 11 9.14 39.95 12.08 8.13 423.96 2.12
CUUC109151 Probabl WRKY transcription factor 57-like 153.19 176.78 13.09 135.11 110.75 13.70
CUUC80636 WRKY transcription factor 11 7.99 12.59 12.15 9.14 71.52 3.25
CUUC101660 WRKY transcription factor 11 91.93 89.85 47.91 70.93 194.23 12.40
CUUC98190 Probable WRKY transcription factor 15-like 6.36 7.38 3.09 6.81 15.78 1.95
CUUC95930 Probable WRKY transcription factor 40-like 16.60 50.80 24.11 73.23 756.56 10.15
CUUC99636 Probable WRKY transcription factor 48-like 24.91 28.80 90.78 17.46 53.54 41.51
Zinc finger CUUC63321 Zinc finger protein 6-like 4.03 0.07 39.31 2.08 0.24 11.48
CUUC61049 Zinc finger protein zat10-like 396.63 148.71 1436.86 501.20 1727.79 509.51
CUUC99174 DOF zinc finger 0.11 11.64 0.27 0.34 80.45 0.21
CUUC98221 Zinc finger protein 15.27 41.14 13.03 12.66 20.12 5.73
CUUC96411 Zinc finger protein 11.38 16.64 1.53 19.49 78.29 2.59
CUUC62446 Zinc finger A20 and AN1 domain-containing stress-associated protein 8-like 795.38 1812.88 84.14 402.13 200.91 59.30
CUUC114244 Zinc finger protein constans-like 16-like 136.78 22.13 0.91 114.19 47.78 1.13
CUUC90956 DOF zinc finger 30.54 7.16 7.94 10.04 7.48 1.68
CUUC99589 Zinc finger A20 and AN1 domain-containing stress-associated protein 5-like 167.88 264.77 204.49 146.95 600.31 101.75
Zinc finger CUUC94374 Zinc finger protein constans-like 5-like 101.80 54.60 33.48 112.14 122.61 29.87
CUUC82499 Zinc finger protein ZAT10-like 0.64 6.27 2.85 1.18 12.34 2.68
CUUC110378 NF-X1-type zinc finger protein NFXL1 8.57 8.57 5.03 8.44 14.71 3.99
CUUC111731 Zinc finger protein 6-like 0.71 0.00 29.72 0.00 0.00 1.87
CUUC90133 Zinc finger AN1 domain-containing stress-associated protein 12-like 13.01 23.39 127.98 16.81 70.74 68.77
CUUC115999 Zinc finger CCCH domain-containing protein 40-like 15.88 15.96 49.68 6.82 16.31 17.54
CUUC90883 CCCH-type zinc finger protein 157.10 37.39 4.55 86.19 8.55 5.36
CUUC90884 Zinc finger CCCH domain-containing protein 49-like 465.40 98.87 14.02 240.48 17.12 10.80
CUUC90885 Zinc finger CCCH domain-containing protein 49-like 661.73 160.02 13.39 308.34 24.90 20.43
CUUC63652 Zinc finger protein constans-like 9-like 11.31 43.71 8.70 19.90 16.26 8.59
CUUC107974 Zinc finger protein nutcracker-like 7.45 10.06 2.28 10.43 2.83 1.52
GRAS CUUC81379 DELLA protein 0.82 0.68 0.28 2.70 6.44 0.07
CUUC105134 DELLA protein GAIP 11.12 9.99 36.80 13.29 10.46 20.50
HSF CUUC120379 Heat stress transcription factor b-2a-like 5.38 23.54 6.75 5.67 22.41 6.49
CUUC114014 Heat stress transcription factor c-1-like 2.22 0.00 4.14 0.87 2.10 1.83
Homeobox-leucine zipper CUUC100213 Homeobox protein ATH1-like 10.83 28.85 0.91 10.23 14.87 2.55
CUUC94869 Homeobox-leucine zipper protein ATHB-6-like 6.71 34.04 0.22 4.98 20.26 2.54
CUUC94870 Homeobox-leucine zipper protein ATHB-6-like 30.21 42.74 4.06 39.53 30.61 4.67
CUUC103438 Homeobox-leucine zipper protein ATHB-7 4.30 8.57 0.55 2.19 9.27 1.27
CUUC64965 Homeobox-leucine zipper protein ATHB-13-like 162.15 94.10 7.62 196.41 103.56 24.87
CUUC114435 Homeobox-leucine zipper protein REVOLUTA-like 7.02 7.87 0.45 10.72 2.76 0.23
NAC CUUC111022 NAC domain-containing protein 2-like 12.90 10.53 7.26 15.12 37.27 5.11
CUUC111023 NAC domain-containing protein 2-like 44.99 65.62 39.93 52.37 341.98 35.31
CUUC127119 NAC domain-containing protein 7-like 0.00 0.32 5.03 0.11 0.50 3.64
Auxin CUUC79119 Auxin response factor 18-like 3.27 8.95 0.20 2.96 6.95 0.18
ASG CUUC104842 Transcription factor ASG4-like 68.56 64.21 5.37 50.61 23.46 7.22
TCP CUUC114074 Transcription factor TCP14-like 15.09 29.40 6.93 31.43 22.70 5.66
bZIP CUUC109603 bZIP transcription factor 17-like 12.50 24.50 37.19 12.39 69.08 19.55
CUUC105987 bZIP transcription factor bZIP107 3.07 4.04 0.55 5.08 4.85 0.33
Others CUUC100506 Transcription initiation factor IIB-2 24.24 33.53 16.27 31.19 44.73 13.84
CUUC100507 Transcription initiation factor IIB-2 7.88 27.61 12.38 7.70 53.61 6.89
Others CUUC95110 Probable CRR4-associated factor 1 homolog 11-like 57.66 76.32 89.75 80.36 547.40 32.01
CUUC90180 Probable CRR4-associated factor 1 homolog 11-like 87.95 242.84 192.73 145.45 1057.13 80.70
CUUC110049 Transcription factor LHW-like 60.23 115.26 25.12 135.27 81.23 35.87