Fig. 5

Promoter types in O. dioica. Schematic shows representative features of maternal, zygotic, ubiquitous (and ribosomal protein), tissue-specific and spermatogenic promoters with the key stages of the O. dioica life cycle. Horizontal lines represent positions of CAGE tags to indicate broad (staggered) or sharp (end-aligned) promoter architectures; green ovals represent pre-initiation complex sub-units. Motifs and dinucleotide enrichments are indicated. Brown circles represent positions of nucleosomes: no overlap indicates ordered positioning; question marks indicate lack of data. Trans-splicing with the spliced-leader (SL) at an AG acceptor site is also shown at promoter types where this is common. Boxes represent enrichments of histone modifications across maternal, spermatogenesis and adult promoters: red = enrichment; white = depletion