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Table 1 Proportion of DNA/TcMar-Tc1, microsatellites contents out of all repeats in freshwater, marine and diadromous teleost species

From: Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments

 

Species

Order

DNA/TcMar-Tc1

Microsatellites

Freshwater species

Esox lucius

Esociformes

35.9%

4.8%

Fundulus heteroclitus

Cyprinodontiformes

22.6%

4.6%

Xiphophorus hellerii

Cyprinodontiformes

22.7%

5.1%

Xiphophorus couchianus

Cyprinodontiformes

22.3%

5.1%

Amphilophus citrinellus

Perciformes

23.0%

6.2%

Xiphophorus maculatus

Cyprinodontiformes

22.0%

6.2%

Lepisosteus oculatus

Lepisosteiformes

10.5%

3.0%

Pundamilia nyererei

Perciformes

18.7%

5.8%

Haplochromis burtoni

Perciformes

19.6%

6.1%

Maylandia zebra

Perciformes

16.8%

5.3%

Neolamprologus brichardi

Perciformes

20.9%

6.7%

Cyprinodon nevadensis

Cyprinodontiformes

7.6%

2.5%

Poecilia formosa

Cyprinodontiformes

19.3%

6.5%

Oreochromis niloticus

Perciformes

15.9%

5.4%

Poecilia reticulata

Cyprinodontiformes

17.8%

6.1%

Poecilia mexicana

Cyprinodontiformes

18.9%

6.7%

Astyanax mexicanus

Characiformes

21.8%

8.0%

Poecilia latipinna

Cyprinodontiformes

19.5%

7.4%

Cyprinodon variegatus

Cyprinodontiformes

8.2%

3.4%

Oryzias latipes

Beloniformes

5.0%

2.6%

Ictalurus punctatus

Siluriformes

19.9%

14.1%

Danio rerio

Cypriniformes

6.1%

5.9%

Cyprinus carpio

Cypriniformes

6.4%

7.1%

Sinocyclocheilus grahami

Cypriniformes

4.7%

5.7%

Sinocyclocheilus rhinocerous

Cypriniformes

3.4%

6.0%

Sinocyclocheilus anshuiensis

Cypriniformes

3.2%

6.2%

Pimephales promelas

Cypriniformes

3.1%

6.7%

Cottus rhenanus

Scorpaeniformes

0.9%

17.8%

Tetraodon nigroviridis

Tetraodontiformes

1.3%

31.1%

Diadromous species

Salmo salar

Salmoniformes

23.6%

7.5%

Anguilla anguilla

Anguilliformes

11.9%

11.4%

Anguilla rostrata

Anguilliformes

11.8%

13.9%

Marine species

Thunnus orientalis

Perciformes

3.6%

9.3%

Pampus argenteus

Perciformes

5.6%

15.2%

Gasterosteus aculeatus

Gasterosteiformes

4.1%

12.8%

Miichthys miiuy

Perciformes

4.0%

14.7%

Notothenia coriiceps

Perciformes

2.3%

9.5%

Dicentrarchus labrax

Perciformes

2.4%

11.9%

Larimichthys crocea

Perciformes

3.4%

17.7%

Takifugu rubripes

Tetraodontiformes

3.3%

19.9%

Sebastes nigrocinctus

Scorpaeniformes

1.1%

8.9%

Cynoglossus semilaevis

Pleuronectiformes

2.7%

23.1%

Takifugu flavidus

Tetraodontiformes

2.4%

21.8%

Sebastes rubrivinctus

Scorpaeniformes

1.0%

9.1%

Clupea harengus

Clupeiformes

3.0%

29.8%

Latimeria chalumnae

Coelacanthiformes

0.0%

1.7%

Gadus morhua

Gadiformes

0.4%

31.4%