Fig. 4
From: Genome-wide scan for commons SNPs affecting bovine leukemia virus infection level in dairy cattle
Gene context and LD map of the bovine chromosome 23 containing the SNPs significantly associated in the GWAS. A) BTA23:24,872,758–29,535,762 bp. ■PVL significant SNPs; red square symbol: WBCs significant SNPs; ----- log10(p)_PVL; red broken line: log10(p)_WBC; MAF: Minimum Allele Frequency. Local LD map estimates (D´) based on 235 SNPs located within the cattle MHC region in founder maternal chromosomes. Triangles delimited with black lines identify haplotype blocks derived from Haploview [55]. The gene content of the region according to the bovine genome assembly UMD3.1 was obtained from Ensembl Genome Browser (http://www.ensembl.org). Red vertical bars indicate SNPs of the SNP50K chip located in the region