From: High-throughput detection of RNA processing in bacteria
Genomic Coordinates | Name | Size bp | Identity Gomez-Lozano, et al. | Identity Wurtzel, et al. | Complementarity (potential binding sites within other transcripts) | Fold change in biofilms | Fold change in swarming motility |
---|---|---|---|---|---|---|---|
143,349–143,517 | PA0123.1 | 169 | pant15 | Not identified | None | 1 | 10 |
326,875–327,066 | PA0290.1 | 192 | pant37 | PA14sr_012 | pilW, plcH | −9 | 1 |
334,491–334,686 | PA0296.1 | 196 | Not identified | P1 | rne | −2 | 1 |
354,527–354,742 | PA0314.1 | 216 | pant42 | Not identified | None | −5 | 1 |
586,867–586,990 | PA0527.11 | 124 | rsmY | rsmY | None | 4 | 11 |
720,091–720,345 | PA0667.1 | 255 | Not identified | Not identified | PA3505, PA2897, PA0690 | −3 | 1 |
798,865–799,255 | PA0730.1 | 391 | pant80 | PA14sr_122 | None | −3 | 44 |
883,307–883,582 | PA0805.1 | 276 | pant89 | PA14sr_119PA14sr_120 | None | −5 | −5 |
1,045,414–1,045,733 | PA0958.1 | 320 | pant103 | PA14sr_112 | None | −6 | 2 |
1,182,820–1,183,057 | PA1091.1 | 238 | pant119 | Not identified | PA0588 | 3 | 5 |
1,254,432–1,254,698 | PA1156.1 | 267 | pant125 | PA14sr_105 | PA1123, phuR | 1 | 1 |
2,761,459–2,761,704 | PA2461.1 | 246 | pant225, | PA14sr_076, | PA2460, PA2458 | −8 | −3 |
2,761,599–2,761,911 | PA2461.2 | 313 | pant226 | PA14sr_077 | PA2460, PA2458 | −5 | 1 |
2,964,898–2,965,137 | PA2461.3 | 240 | pant233 | Not identified | PA5134 | −2 | 3 |
2,977,373–2,977,611 | PA2633.1 | 239 | pant235 | PA14sr_067 | PA3672, recJ, nrdG, PA3522, PA3949, PA5325 | 5 | 8 |
3,312,577–3,312,693 | PA2952.1 | 117 | Not identified | PA14sr_061 | PA4629 | −2 | 2 |
3,545,572–3,545,872 | PA3159.1 | 301 | pant292 | no PA14 ortholog | None | −2 | 3 |
3,697,226–3,697,433 | PA3299.1 | 208 | Not identified | Not identified | PA0690, cyoB | 2 | 1 |
3,930,282–3,930,639 | PA3514.1 | 358 | pant326 | no PA14 ortholog | tagF1 | 10 | 1 |
4,012,653–4,012,735 | PA3580.1 | 83 | pant337 | Not identified | None | −4 | 1 |
4,536,541–4,536,848 | PA4055.1 | 308 | pant373 | Not identified | PA2728, mfd, chpA, PA3641 | −3 | −2 |
5,080,450–5,080,630 | PA4539.1 | 181 | pant415 | Not identified | wzz | 2 | 10 |
5,207,898–5,208,463 | PA4639.1 | 566 | pant428 | PA14sr_139 | PA5156, PA2502, PA4510, aruI, PA0475, PA0558, PA1025 | 5 | n/a |
5,224,568–5,224,795 | PA4656.1 | 228 | pant430 | Not identified | PA2038, PA3517, PA2152, pslE, PA2472, PA2750 | −4 | 3 |
5,283,960–5,284,110 | PA4704.11 | 151 | prrF1 | prrF1 | prrF2 | 12 | 217 |
5,284,172–5,284,319 | PA4704.21 | 148 | prrF2 | prrF2 | prrF1 | 20 | 141 |
5,283,960–5,284,319 | prrH 1 | 360 | prrH | prrH | prrF1, prrF2 | 13 | 163 |
5,309,047–5,309,325 | PA4726.3 | 279 | pant439 | PA14sr_141 | ispA, hepA, PA2018, PA3461 | −5 | 1 |
5,718,503–5,718,753 | PA5078.1 | 251 | pant465 | Not identified | PA0312, kds | −6 | 3 |
5,973,539–5,973,681 | PA5304.1 | 143 | pant487 | Not identified | None | 1 | 5 |
5,986,186–5,986,427 | PA5316.2 | 242 | pant488 | PA14sr_154 | PA1302, PA2933, gcp, PA0241, PA0364, pilJ, hsiC2, PA2325, PA3037, rnhB, pchF, recD, algP | −7 | −2 |