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Table 8 Top 10 genes in anoxic DII embryos with greatest transcript abundance changes relative to normoxia

From: The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development

 

Gene symbol

Gene type

Description

P-valuea

ΔFPKMb

Up

LOC106513602

protein coding

heat shock protein 30-like

2.12E-28

4786

 

pck1

protein coding

phosphoenolpyruvate carboxykinase 1

6.00E-28

2099

 

LOC106513603

protein coding

heat shock protein 30-like

3.23E-22

1332

 

LOC106520367

protein coding

heat shock cognate 71 kDa protein-like

1.06E-30

1028

 

LOC106533043

protein coding

heat shock protein HSP 90-alpha-like

4.86E-22

926

 

sqstm1

protein coding

sequestosome 1

9.59E-07

873

 

LOC106523747

protein coding

apolipoprotein A-I-like

9.82E-20

697

 

LOC106534642

pseudo

ubiquitin-like

3.83E-02

608

 

LOC106535465

pseudo

ubiquitin-like

3.50E-06

585

 

LOC106531886

protein coding

wiskott-Aldrich syndrome protein family member 2-like

1.43E-02

445

Down

ND6

protein coding

Mitochondrially encoded NADH:Ubiquinone Oxidoreductase Core Subunit 6

1.43E-04

-1595

 

ND2

protein coding

Mitochondrially encoded NADH:Ubiquinone Oxidoreductase Core Subunit 2

6.28E-05

− 969

 

ND1

protein coding

Mitochondrially encoded NADH:Ubiquinone Oxidoreductase Core Subunit 1

1.10E-02

− 823

 

ND5

protein coding

Mitochondrially encoded NADH:Ubiquinone Oxidoreductase Core Subunit 5

2.47E-02

−775

 

16S

rRNA

Mitochondrially encoded 16S ribosomal RNA

8.74E-03

− 441

 

LOC106511533

protein coding

NADH-ubiquinone oxidoreductase chain 5-like

4.44E-02

− 429

 

Pseudo16S

pseudo

Mitochondrially encoded 16S rRNA pseudogene

1.38E-19

− 219

 

tRNALeu2–1

tRNA

Mitochondrial tRNA Leu2 copy 1

2.73E-41

−153

 

tRNALeu2–2

tRNA

Mitochondrial tRNA Leu2 copy 2

1.10E-34

− 149

 

txnip

protein coding

thioredoxin interacting protein

4.61E-08

−51

  1. aFDR adjusted P-value
  2. bChange in mean FPKM values of DII embryos in anoxia relative to DII t = 0
  3. FPKM, Fragments per kilobase of transcript per million mapped reads