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Table 1 Transposable element composition of Silene latifolia genome

From: The slowdown of Y chromosome expansion in dioecious Silene latifolia due to DNA loss and male-specific silencing of retrotransposons

Classification

Genome proportion [%]

Repeat Type

Superfamily

Family

BYS-fe

BYS-ma

LEL-fe

LEL-ma

LIB-fe

LIB-ma

TRE-fe

TRE-ma

TIS-fe

TIS-ma

WAL-fe

WAL-ma

LAR-fe

LAR-ma

LTR retrotransposons

Gypsy

Athila

17.54

18.79

18.18

18.53

18.37

17.90

18.08

18.61

18.00

18.31

18.37

17.88

16.90

17.09

  

Ogre

17.10

16.61

17.22

15.53

16.28

16.11

16.96

16.80

15.93

14.54

15.87

15.00

16.67

15.21

  

Chromovirus

11.28

12.86

12.63

12.45

12.75

12.90

12.17

13.62

12.19

11.94

12.44

12.54

12.13

10.94

  

Tat

3.25

3.12

3.78

3.38

3.52

3.67

3.44

3.86

2.98

3.00

3.07

3.43

2.93

2.67

  

sum

49.17

51.38

51.82

49.89

50.92

50.57

50.66

52.89

49.11

47.79

49.75

48.85

48.62

45.90

 

Copia

Angela/Tork

16.51

16.09

16.18

16.92

16.36

16.45

16.92

15.88

18.08

17.91

17.97

18.61

17.65

19.49

  

Maximus/SIRE

2.56

2.02

2.31

2.55

2.45

2.39

2.55

2.26

2.49

2.65

2.50

2.38

2.45

2.50

  

TAR

0.22

0.32

0.20

0.23

0.24

0.22

0.19

0.22

0.21

0.23

0.24

0.25

0.29

0.22

  

sum

19.29

18.42

18.69

19.71

19.05

19.07

19.66

18.36

20.78

20.80

20.72

21.24

20.39

22.22

Non-LTR retrotransposons

LINE

 

0.27

0.24

0.22

0.21

0.20

0.25

0.22

0.23

0.22

0.23

0.19

0.22

0.24

0.27

 

Caulimoviridae

 

0.07

0.08

0.06

0.08

0.08

0.08

0.09

0.05

0.06

0.07

0.05

0.06

0.09

0.11

DNA transposons

CMC-EnSpm

 

1.70

1.63

1.66

1.67

1.67

1.70

1.74

1.63

1.69

1.69

1.80

1.75

1.76

1.76

 

MULE-MuDR

 

1.65

1.33

1.45

1.56

1.48

1.50

1.52

1.51

1.44

1.55

1.48

1.54

1.19

1.42

 

Helitron

 

0.18

0.20

0.16

0.19

0.16

0.18

0.16

0.16

0.18

0.19

0.18

0.19

0.25

0.23

  

sum

3.23

3.16

3.27

3.42

3.31

3.38

3.42

3.30

3.30

3.44

3.46

3.48

3.41

3.41

Total TEs

  

71.69

72.96

73.78

73.02

73.28

73.02

73.74

74.54

73.19

72.03

73.92

73.57

72.21

71.53

  1. Genome proportions of transposable element superfamilies and families in percentage for male and female from seven ecotypes
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BMC Genomics

ISSN: 1471-2164

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