Classification | Genome proportion [%] | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Repeat Type | Superfamily | Family | BYS-fe | BYS-ma | LEL-fe | LEL-ma | LIB-fe | LIB-ma | TRE-fe | TRE-ma | TIS-fe | TIS-ma | WAL-fe | WAL-ma | LAR-fe | LAR-ma |
LTR retrotransposons | Gypsy | Athila | 17.54 | 18.79 | 18.18 | 18.53 | 18.37 | 17.90 | 18.08 | 18.61 | 18.00 | 18.31 | 18.37 | 17.88 | 16.90 | 17.09 |
 |  | Ogre | 17.10 | 16.61 | 17.22 | 15.53 | 16.28 | 16.11 | 16.96 | 16.80 | 15.93 | 14.54 | 15.87 | 15.00 | 16.67 | 15.21 |
 |  | Chromovirus | 11.28 | 12.86 | 12.63 | 12.45 | 12.75 | 12.90 | 12.17 | 13.62 | 12.19 | 11.94 | 12.44 | 12.54 | 12.13 | 10.94 |
 |  | Tat | 3.25 | 3.12 | 3.78 | 3.38 | 3.52 | 3.67 | 3.44 | 3.86 | 2.98 | 3.00 | 3.07 | 3.43 | 2.93 | 2.67 |
 |  | sum | 49.17 | 51.38 | 51.82 | 49.89 | 50.92 | 50.57 | 50.66 | 52.89 | 49.11 | 47.79 | 49.75 | 48.85 | 48.62 | 45.90 |
 | Copia | Angela/Tork | 16.51 | 16.09 | 16.18 | 16.92 | 16.36 | 16.45 | 16.92 | 15.88 | 18.08 | 17.91 | 17.97 | 18.61 | 17.65 | 19.49 |
 |  | Maximus/SIRE | 2.56 | 2.02 | 2.31 | 2.55 | 2.45 | 2.39 | 2.55 | 2.26 | 2.49 | 2.65 | 2.50 | 2.38 | 2.45 | 2.50 |
 |  | TAR | 0.22 | 0.32 | 0.20 | 0.23 | 0.24 | 0.22 | 0.19 | 0.22 | 0.21 | 0.23 | 0.24 | 0.25 | 0.29 | 0.22 |
 |  | sum | 19.29 | 18.42 | 18.69 | 19.71 | 19.05 | 19.07 | 19.66 | 18.36 | 20.78 | 20.80 | 20.72 | 21.24 | 20.39 | 22.22 |
Non-LTR retrotransposons | LINE | Â | 0.27 | 0.24 | 0.22 | 0.21 | 0.20 | 0.25 | 0.22 | 0.23 | 0.22 | 0.23 | 0.19 | 0.22 | 0.24 | 0.27 |
 | Caulimoviridae |  | 0.07 | 0.08 | 0.06 | 0.08 | 0.08 | 0.08 | 0.09 | 0.05 | 0.06 | 0.07 | 0.05 | 0.06 | 0.09 | 0.11 |
DNA transposons | CMC-EnSpm | Â | 1.70 | 1.63 | 1.66 | 1.67 | 1.67 | 1.70 | 1.74 | 1.63 | 1.69 | 1.69 | 1.80 | 1.75 | 1.76 | 1.76 |
 | MULE-MuDR |  | 1.65 | 1.33 | 1.45 | 1.56 | 1.48 | 1.50 | 1.52 | 1.51 | 1.44 | 1.55 | 1.48 | 1.54 | 1.19 | 1.42 |
 | Helitron |  | 0.18 | 0.20 | 0.16 | 0.19 | 0.16 | 0.18 | 0.16 | 0.16 | 0.18 | 0.19 | 0.18 | 0.19 | 0.25 | 0.23 |
 |  | sum | 3.23 | 3.16 | 3.27 | 3.42 | 3.31 | 3.38 | 3.42 | 3.30 | 3.30 | 3.44 | 3.46 | 3.48 | 3.41 | 3.41 |
Total TEs | Â | Â | 71.69 | 72.96 | 73.78 | 73.02 | 73.28 | 73.02 | 73.74 | 74.54 | 73.19 | 72.03 | 73.92 | 73.57 | 72.21 | 71.53 |