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Table 4 Performance comparison of AltHap, H-PoP, BP, and SCGD on a simulated biallelic triploid data set with haplotype block length m=1000. HapTree could not finish the simulations in 48 hours

From: Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids

   AltHap H-PoP BP SCGD
Err Cov CPR MEC t(s) CPR MEC t(s) CPR MEC t(s) CPR MEC t(s)
0.002 10 98.2 322 30 71.5 3642 14 68.9 4210 132 69.7 11988 159
0.002 20 95.1 1986 59 73.1 7728 41 72.9 7762 416 51.8 35660 283
0.002 30 98.4 2412 109 70.8 12865 265 69.7 14751 1310 52.1 53248 422
0.01 10 91.7 1379 30 70.0 3786 14 68.1 4092 138 68.4 12108 161
0.01 20 97.7 1597 60 70.9 8375 42 68.9 8601 460 52.0 35606 295
0.01 30 98.9 3143 110 71.8 11769 266 68.1 15124 1301 52.7 53185 422
0.05 10 97.1 2802 31 70.1 3978 14 66.9 4227 135 67.5 13037 158
0.05 20 94.9 8222 59 70.3 9276 41 70.1 9484 460 51.7 35693 285
0.05 30 82.6 17284 110 71.3 13778 268 67.6 16876 1315 52.1 52499 431
  1. The best results in each simulation setting are in bolface font