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Table 5 Performance comparison of AltHap, H-PoP, BP, and SCGD on a simulated biallelic tetraploid data set with haplotype block length m=1000. HapTree could not finish the simulations in 48 hours

From: Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids

   AltHap H-PoP BP SCGD
Err Cov CPR MEC t(s) CPR MEC t(s) CPR MEC t(s) CPR MEC t(s)
0.002 10 91.1 1113 43 70.7 3366 43 69.8 4568 290 67.1 14839 208
0.002 20 95.0 2113 87 73.4 7359 113 71.2 9434 540 51.7 41241 419
0.002 30 99.9 674 163 72.6 11693 598 71.5 12745 1496 51.8 61885 653
0.01 10 98.2 938 44 69.3 3511 46 66.4 6475 296 67.1 14819 213
0.01 20 99.3 1668 87 70.3 7882 114 66.9 10213 552 51.5 41712 414
0.01 30 95.3 6518 164 71.0 12392 597 68.4 13245 1485 51.5 61981 652
0.05 10 93.7 3905 44 67.7 4110 46 64.5 6869 306 65.0 15861 213
0.05 20 95.8 9645 89 69.1 9109 118 68.5 11477 623 51.9 41042 408
0.05 30 81.5 18690 165 70.0 14212 601 67.5 17681 1504 51.7 62261 643
  1. The best results in each simulation setting are in bolface font