Table 8 Performance of AltHap on simulated polyallelic tetraploid data set with haplotype block length m=1000. H-PoP, BP, HapTree, and SCGD cannot assemble polyallelic polyploid haplotypes
From: Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids
Error rate | Cov | CPR | MEC | t(s) |
|---|---|---|---|---|
0.002 | 5 | 79.4 | 2380 | 109.00 |
0.002 | 10 | 86.5 | 2043 | 220.6 |
0.002 | 15 | 93.8 | 2148 | 328.49 |
0.002 | 20 | 96.3 | 2388 | 432.28 |
0.01 | 5 | 79.7 | 2398 | 113.08 |
0.01 | 10 | 84.1 | 2927 | 220.33 |
0.01 | 15 | 82.8 | 5787 | 327.10 |
0.01 | 20 | 99.2 | 2319 | 432.85 |
0.05 | 5 | 74.6 | 4721 | 113.38 |
0.05 | 10 | 89.0 | 5146 | 211.43 |
0.05 | 15 | 92.3 | 7555 | 327.20 |
0.05 | 20 | 92.0 | 13704 | 435.15 |