Table 1 A summary of transcriptome data from eight apple snails used for database construction. Tissues: albumen gland (AG), digestive gland (DG), foot (F), gill (G), lung (L), mantle (M), kidney (K), stomach (S), testis (T) and other tissues (OT; including DG, F, M and T)
From: AmpuBase: a transcriptome database for eight species of apple snails (Gastropoda: Ampullariidae)
Species (SRA accession No.) | Sampling location | Tissue | Platform | Length (bp) | Clean read (bp) | Q20 (%) | GC (%) |
|---|---|---|---|---|---|---|---|
Old World | |||||||
 Lanistes nyassanus Dohrn, 1865 (SRP127201) | F4 or F5 offspring from a lab inbred population; originally collected from Lake Malawi, Africa | AG | Hiseq2000 | 100 | 36,892,514 | 97.89 | 47.34 |
OT without T | Hiseq2000 | 100 | 39,555,832 | 98.04 | 45.12 | ||
 Pila ampullacea (Linnaeus, 1758) (SRP127221) | Wild-caught from Nong Phok District, Roi Et Province, Thailand | AG | Hiseq4000 | 100 | 78,216,048 | 98.66 | 46.44 |
OT | Hiseq4000 | 100 | 82,268,586 | 98.76 | 44.34 | ||
New World | |||||||
 Asolene platae (Maton, 1809) (SRP127224) | Wild-caught from Lago de Regatas, Buenos Aires, Argentina | AG | Hiseq2000 | 90 | 47,404,352 | 96.8 | 46.08 |
AG | Hiseq4000 | 100 | 69,830,648 | 98.89 | 45.95 | ||
OT without T | Hiseq4000 | 100 | 97,420,524 | 99.18 | 45.42 | ||
 Marisa cornuarietis (Linnaeus, 1758) (SRP127203) | Aquarium shop, Mong Kok, Hong Kong | AG | Hiseq2000 | 90 | 51,889,926 | 97.55 | 46.11 |
OT | Hiseq2000 | 90 | 53,590,040 | 96.62 | 45.24 | ||
 Pomacea diffusa Blume, 1957 (SRP127204) | Aquarium shop, Mong Kok, Hong Kong | AG | Hiseq2000 | 90 | 54,266,010 | 97.71 | 44.11 |
OT | Hiseq2000 | 90 | 54,579,594 | 96.91 | 44.91 | ||
 Pomacea scalaris (d’Orbigny, 1835) (SRP127220) | Wild-caught from Lago de Regatas, Buenos Aires, Argentina | AG | Hiseq2000 | 90 | 72,341,892 | 98.43 | 43.05 |
 Pomacea canaliculata (Lamarck, 1819) (SRP127216) | Wild-caught from Sheung Shui, Hong Kong | AG | Hiseq2500 | 125 | 50,399,554 | 97.90 | 45.04 |
DG | Hiseq2500 | 125 | 45,063,414 | 97.78 | 49.34 | ||
F | Hiseq2500 | 125 | 54,307,040 | 98.17 | 43.78 | ||
G | Hiseq2500 | 125 | 49,217,508 | 98.01 | 45.20 | ||
K | Hiseq2500 | 125 | 50,518,406 | 98.04 | 45.33 | ||
L | Hiseq2500 | 125 | 40,886,322 | 97.97 | 45.30 | ||
M | Hiseq2500 | 125 | 48,951,426 | 98.09 | 46.47 | ||
S | Hiseq2500 | 125 | 44,860,264 | 97.65 | 45.28 | ||
T | Hiseq2500 | 125 | 52,304,178 | 97.70 | 45.71 | ||
 (SRA030614.2) | Wild-caught from Yuen Long, Hong Kong | OT without T | Hiseq2000 | 90 | 25,723,522 | 95.65 | 46.83 |
 Pomacea maculata Perry, 1810 (SRP127219) | Wild-caught from Paraná River, Argentina | AG | Hiseq2000 | 100 | 52,732,156 | 98.20 | 44.94 |
OT | Hiseq2000 | 100 | 54,961,478 | 98.26 | 45.05 | ||