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Table 1 Comparison of genome statistics to other nematode species

From: Improving eukaryotic genome annotation using single molecule mRNA sequencing

Species Phylogenetic clade # Genes CEGMA completeness Average gene length Assembly Length (bp) # Scaffolds N50 GC content % Contig Length
# Length Mean Median Max Length
Trichinella spiralis I 16,380 95.6% 952.8 63,525,422 6863 4 6,373,445 33.9 9256 1071 12,041,450
Trichuris muris I 11,004 96.1% 1245.7 84,674,602 1683 59 400,602 44.8 50,312 1914 1,774,400
Trichuris trichiura I 8813 96.1% 1293.9 75,496,503 4156 265 70,602 42.2 18,166 3965 533,758
Ascaris suum III 15,260 98.9% 1188.5 265,545,801 31,538 260 290,558 37.8 8420 226 1,465,500
Brugia malayi III 18,074 97.4% 1012.2 94,136,243 9827 62 191,089 29.6 9579 1340 5,235,760
Dirofilaria immitis III 12,857 98.0% 1134.2 88,309,529 16,061 219 71,281 28 5498 754 1,085,577
Loa loa III 15,445 97.8% 987.8 91,373,458 5773 130 174,388 31 15,828 1186 1,325,655
Globodera pallida IV 16,403 83.8% 1079.6 124,672,549 6873 298 121,687 36.7 18,139 1699 600,076
Meloidogyne hapla IV 14,420 97.2% 1044.7 53,017,507 3452 372 37,608 27.4 15,358 5814 360,446
Caenorhabditis elegans V 30,697 100.0% 1229.5 100,286,401 7 3 17,493,829 35.4 14,326,629 15,279,421 20,924,180
Haemonchus contortus V 24,466 95.0% 1124.8 369,846,877 23,860 1151 83,287 43.1 15,501 1515 947,606
Necator americanus V 19,153 97.2% 804.6 244,075,060 11,864 284 211,861 40.2 20,573 1315 1,890,151
Pristionchus pacificus V 24,217 98.0% 994.3 172,494,865 18,083 39 1,244,534 42.8 9539 685 5,268,024
AC-Orig V 16,155 98.9% 894.3 348,994,891 8098 263 373,206 43.5 43,096 1515 2,174,208
AC-PB V 17,540 962.8