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Table 1 Identification of B. tulda homologous sequences of circadian clock, clock integrator and pathway integrator genes

From: Identification, characterization and gene expression analyses of important flowering genes related to photoperiodic pathway in bamboo

Genes

B. tulda query sequences

Best O. sativa hits

Identity (%)

Query cover (%)

E value

Best B. distachyon hits

Identity (%)

Query cover (%)

E value

Best P. heterocycla hits

Identity (%)

Query cover (%)

E value

Best hits in NCBI non-redundant database

Identity (%)

Query cover (%)

E value

LATE ELONGATED HYPOCOTYL (LHY)

MF983713

Os08g06110

78.31

100

0

Bradi3g16515

73

100

0

PH01001283G0510

77

100

0

Oryza brachyantha (XP_006659145.1)

78

100

0

TIMING OF CAB EXPRESSION 1 (TOC1)

KY249524

Os02g40510

84

100

0

Bradi3g48880

80

95.21

0

PH01003618G0130

93

100

0

O. sativa (BAD38854.1)

85

100

0

ZEITLUPE (ZTL)

MF983715

Os02g05700

90.28

100

0

Bradi3g04040

89

100

0

PH01000114G1110

93

100

0

Thyridolepis multiculmis (AML79118.1)

93

100

0

GIGANTEA (GI)

MF983716

Os01g08700

91

100

0

Bradi2g05226

88

100

0

PH01002142G0290

70

100

E− 129

Setaria italica (XP_004968438.1)

94

100

0

CONSTANS A (COA)

KY249523

Os06g16370

59

100

1.00E− 148

Bradi1g43670

74.08

100

4.10E−120

PH01005551G0030

51

97.64

3.00E−94

Oryza. rufipogon (AFK31610.1)

78

100

0

CONSTANS B (COB)

MF983714

Os09g06464

71.06

100

1.00E− 141

Bradi3g56260

34.04

92.66

4.80E−17

PH01000048G0270

68

100

E−117

Hordeum vulgare (AAM74066.1)

70

100

2.00E−138

FLOWERING LOCUS T (FT)

KT003820

Os06g06320

89.71

98.31

1.00E−118

Bradi1g48830

93

87.64

1.60E−106

PH01002288G0050

62

85.95

7.00E−52

Phyllostachys meyeri (BAI49899.1)

94

100

5.00E−122

KT003821

Os06g06320

89.71

98.31

1.00E−118

Bradi1g48830

93

87.64

1.60E−106

PH01002288G0050

62

85.95

7.00E−52

P. meyeri (BAI49899.1)

94

100

5.00E−122

KU726232

Os06g06320

87.43

98.31

1.00E−115

Bradi1g48830

89

99.43

2.00E−116

PH01002288G0050

62

94.94

5.00E−58

P. meyeri (BAI49900.1)

92

100

4.00E−118

KX290774

Os06g06320

88

98.31

1.00E−116

Bradi1g48830

90

99.43

2.30E−117

PH01002288G0050

62

94.94

8.00E−59

P. meyeri (BAI49900.1)

92

100

7.00E− 119

  1. The BLAST-P analyses was done against the reference monocot genome Oryza sativa, phylogenetically close Brachypodium distachyon, temperate bamboo Phyllostachys heterocycla and NCBI non-redundant database using B. tulda amino acid sequences as quarries. Only the top BLAST hit sequences are reported along with the respective identities (%), E values and coverage of the query sequences against the obtained hit sequences (%)
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BMC Genomics

ISSN: 1471-2164

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