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Table 2 Summary of major pathways over-represented in each song nucleus

From: The constitutive differential transcriptome of a brain circuit for vocal learning

HVC

RA

nXIIts

Area X

A. Ion Channels and Cellular Excitability

 Cardiac conduction

Cardiac conduction

Cardiac conduction

Cardiac conduction

 Voltage gated K+ channels

Voltage gated K+ channels

Voltage gated K+ channels

Phase 0 - rapid depolarization

 2 pore K+ channels

Inactivation of Na + channels

 

Phase 2 - plateau phase

Resting membrane potential

 

B. GPCR Signaling

 GPCR Adenosine A2A receptor

GPCR signaling-G alpha q

GPCR signaling-cholera toxin

G alpha (i) signaling events

 GPCR Dopamine D1 receptor

GPCRs, Class A Rhodopsin

GPCR signaling-G alpha i

GPCR signaling-G alpha q

GPCR signaling - Epac and ERK

GPCR signaling - PKA and ERK

GPCR signaling-pertussis toxin

Secretin family receptors

C. Neuromodulatory Systems

 Cholinergic synapse

Biogenic Amine Synthesis

Amphetamine addiction

Adrenergic signaling

Cholinergic synapse

Dopamine Release Cycle

Dopaminergic synapse

Serotonin signaling

Serotonin and anxiety

Beta-agonist/Beta-blockers

D. Intracellular signaling

 Phospholipase D signaling

cAMP signaling pathway

Phospholipase D signaling

cGMP-PKG signaling pathway

 CREB phos. Via CaMKII

cGMP effects

PLC beta mediated events

rho-GEF activation

 Ras signaling pathway

PLC-gamma1 signaling

DAG and IP3 signaling

cGMP-PKG signaling

E. Lipid Metabolism

 HDL-mediated lipid transport

Glycerolipid metabolism

 

Glycosphingolipid biosynthesis

 Lysosphingolipid receptors

Phospholipid Biosynthesis

 

Lysosphingolipid receptors

 triacylglycerol biosynthesis

lipoprotein lipase deficiency

 

Glycerol Kinase Deficiency

 

F. Growth Factor Signaling

 NGF signalling via TRKA

FGFR1 ligand binding

Signaling by EGFR

 

 Signaling by EGFR

FGFR2c ligand binding

Signaling by VEGF

 Signaling by PDGF

Internalization of ErbB1

 Signalling by NGF

 VEGF Signaling Pathway

 VEGFR2 mediated prolif.

G. Axon guidance and cell-cell interaction related

 Axon guidance

 

Axon guidance

Axon guidance

 neurexin/neuroligin complex

neurexin/neuroligin complex

Adherens junctions interact.

 ECM-receptor interaction

Reelin signalling pathway

NCAM1 interactions

 Integrin

Netrin-1 signaling

 LGI-ADAM interactions

Cell adhesion molecules

 neurite out-growth (NCAM)

CRMPs in Sema3A signaling

H. Glutamate transmission

 Activation of NMDA receptors

 

Activation of NMDA receptors

Glutamatergic synapse

Trafficking of AMPA receptors

I. Calcium Signaling

 Calcium signaling pathway

 

Calcium signaling pathway

Calcium signaling pathway

 CAM-kinase activation

CAM-kinase activation

Reduction of cytosolic Ca2+

Calmodulin induced events

Sodium/Calcium exchangers

Elevation of cytosolic Ca2+

J. Peptide signalling

 Gastrin-CREB signaling

 

Gastrin-CREB signaling

Peptide binding receptors

 Oxytocin signaling pathway

Oxytocin signaling pathway

NFAT signaling in lymphocytes

 Renin secretion

Opioid Signalling

Morphine addiction

Vasopressin regulation

Morphine addiction

K. Specific Pathways Shared by two or more song nuclei

 Hemostasis

 

Hemostasis

Hemostasis

 Circadian entrainment

 

Circadian entrainment

Circadian entrainment

 Keratan sulfate biosynthesis

  

Keratan sulfate biosynthesis

 Rhodopsin-like receptors

  

Rhodopsin-like receptors

 Gap junction

 

Gap junction

 

 nitric oxide signaling

 

nitric oxide signaling pathway

 

 Insulin secretion

 

Insulin secretion

 

 Long-term potentiation

 

Long-term potentiation

 

 Taste transduction

 

Taste transduction

 
 

Aldosterone secretion

Aldosterone secretion

 

Purine/Pyrimidine metabolism

Purine/Pyrimidine metabolism

 

Olfactory transduction

Olfactory transduction

L. Pathways Unique to Individual Song Nuclei

 Amyotrophic lateral sclerosis

Cell cycle: g2/m checkpoint

Aquaporin-mediated transport

Gene reg. by peroxisome proliferators

 Angiogenesis overview

Amino acid metabolism

CLEC7A/NFAT activation

 

 Chemokine/DAP12 signaling

somitogenesis

NDK phosphins and dynamin

 

 Glycosaminoglycan metabolism

Glial Cell Differentiation

FTO Obesity Mechanism

 

 RET signaling

peroxisomal oxidation

MNGIE disease

 

 Toxicity of botox A

 

Nicotin-ate/−amide metabolism

 
 

Regulation of pgc-1a

 
 

endocannabinoid signaling

 
 

Salivary secretion

 
 

Signaling by Wnt

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