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Table 1 QTLs for male-sterile traits detected in this study

From: Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

Locus (marker name) Linkage group Position (cM) LOD score Phenotypic variation explained EST name Sequence position SNP Segregation type Description Length of EST (bp) E-value Homologous Arabidopsis locus
AX-115676114 9 33.414 99.99 100.0 MF_BC_CLC_contig_46230 309 A/G lmxll SNARE associated Golgi protein family 530 4.29 AT4G14950.2
AX-115695236 9 33.414 99.99 100.0 reCj11611 1639 A/G lmxll Glycosyl hydrolase family 47 protein 2558 0.00 AT5G43710.1
AX-115678020 9 33.414 99.99 100.0 reCj19250 1927 A/G hkxhk PRH75 DEAD box RNA helicase (PRH75) 2841 0.00 AT5G62190.1
AX-115675027 9 33.414 99.99 100.0 reCj19250 2335 A/G hkxhk PRH75 DEAD box RNA helicase (PRH75) 0.00 AT5G62190.1
AX-115677965 9 34.123 947.48 100.0 MF_BC_CLC_contig_27478 273 A/G nnxnp Pre-mRNA-splicing factor 3 2139 0.00 AT1G28060.1
AX-115681104 9 34.475 99.99 100.0 reCj19314 126 T/G hkxhk Galactosyltransferase family protein 2081 0.00 AT5G62620.1
AX-115669347 9 34.475 99.99 100.0 reCj19314 166 T/C nnxnp Galactosyltransferase family protein 0.00 AT5G62620.1
AX-115676564 9 34.475 99.99 100.0 reCj19314 432 A/G nnxnp Galactosyltransferase family protein 0.00 AT5G62620.1
AX-115664995 9 34.475 99.99 100.0 reCj19314 859 T/G hkxhk Galactosyltransferase family protein 0.00 AT5G62620.1
AX-115679030 9 34.475 99.99 100.0 reCj19314 1623 A/G nnxnp Galactosyltransferase family protein 0.00 AT5G62620.1
AX-115665901 9 34.475 99.99 100.0 reCj19314 2587 T/G nnxnp Galactosyltransferase family protein 0.00 AT5G62620.1