Table 1 Summary of paramutation candidates and their validation
From: Paramutation-like features of multiple natural epialleles in tomato
DMR | chr | Start | End | Type | Differential sRNAs | DE nearest gene | Evidence for heritable methylation change |
|---|---|---|---|---|---|---|---|
Hyper1 | ch12 | 62,124,801 | 62,125,100 | hyperCG/CHG/CHH | yes | no | strong, incomplete penetrance |
Hyper2 | ch02 | 48,226,401 | 48,226,800 | hyperCG/CHG/CHH | yes | no | strong, incomplete penetrance |
Hyper3 | ch09 | 61,960,201 | 61,961,700 | hyperCG/CHG | no | yes | weaker |
Hyper4 | ch04 | 26,469,001 | 26,469,500 | hyperCG/CHG | no | yes | weaker |
Hyper5 | ch09 | 61,962,201 | 61,962,500 | hyperCG/CHG/CHH | no | yes | no |
Hyper6 | ch08 | 59,748,601 | 59,748,900 | hyperCG | yes | no | no |
Hyper7 | ch04 | 58,749,201 | 58,749,500 | hyperCG/CHG/CHH | yes | no | inconclusive |
Hyper8 | ch12 | 39,437,001 | 39,437,700 | hyperCG/CHG | no | yes | inconclusive |
Hyper9 | ch04 | 26,561,001 | 26,561,500 | hyperCG/CHG | no | yes | no, high variability |
Hypo1 | ch07 | 12,086,201 | 12,088,700 | hypoCG/CHG | no | no | strong, incomplete penetrance |
Hypo2 | ch06 | 31,383,601 | 31,384,100 | hypoCG/CHG | no | no | weaker |
Hypo3 | ch06 | 47,125,401 | 47,125,700 | hypoCG/CHH | yes | yes | weaker |
Hypo4 | ch03 | 1,025,801 | 1,026,100 | hypoCG/CHG | no | no | no |
Hypo5 | ch09 | 67,640,601 | 67,641,100 | hypoCG/CHG | no | no | no |
Hypo6 | ch05 | 22,508,201 | 22,508,700 | hypoCG/CHG | no | no | no, high variability |
Hypo7 | ch12 | 34,481,401 | 34,482,700 | hypoCG/CHG/CHH | no | no | no, high variability |
Hypo8 | ch03 | 1,023,801 | 1,024,100 | hypoCG/CHG | no | no | no, high variability |