Table 1 Summary of the sequence data of CGS transcriptome, number of virus gene with paired reads, and significantly enriched immune pathways from different treatments
Sample treatment | CGS | Number of virus genes with paired reads | Significantly enriched immune pathways | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Number of cleaned reads | Number of Unigenes | Number of DEGs (compared to Control) | HCL | TLR | CCC | APP | NKC | III | RIG | |||
1 | Control | 51,382,240 | 70,307 | |||||||||
2 | Control | 56,930,824 | 74,222 | |||||||||
3 | Control | 48,322,278 | 72,107 | |||||||||
Control-total | 156,635,342 | 92,642 | ||||||||||
4 | RGV-1d | 54,425,646 | 72,588 | 557 (501↑, 56↓) | 95 | + | + | |||||
5 | RGV-1d | 58,594,944 | 75,232 | |||||||||
6 | RGV-1d | 63,939,152 | 76,704 | |||||||||
RGV-1d-total | 176,959,742 | 97,513 | ||||||||||
7 | RGV-7d | 49,123,866 | 67,404 | 1852 (933↑, 919↓) | 16 | + | + | + | ||||
8 | RGV-7d | 52,736,612 | 73,301 | |||||||||
9 | RGV-7d | 50,018,476 | 70,402 | |||||||||
RGV-7d-total | 151,878,954 | 92,198 | ||||||||||
10 | ADRV-1d | 56,001,870 | 68,499 | 1013 (763↑, 250↓) | 29 | + | + | + | + | |||
11 | ADRV-1d | 47,824,738 | 67,468 | |||||||||
12 | ADRV-1d | 66,289,046 | 69,480 | |||||||||
ADRV-1d-total | 170,115,654 | 87,131 | ||||||||||
13 | ADRV-7d | 59,093,102 | 67,797 | 3880 (2694↑, 1186↓) | 93 | + | + | + | + | + | + | |
14 | ADRV-7d | 56,800,712 | 77,340 | |||||||||
15 | ADRV-7d | 49,374,622 | 73,957 | |||||||||
ADRV-7d-total | 165,268,436 | 95,375 | ||||||||||
Total | 820,858,128 | 128,533 | ||||||||||