Table 4 Reconstruction of core-, softcore- and pan-genome of the genus Lactobacillus with Brite and Pathway algorithm of GhostKOALA

Brite Reconstruction Result

Core

Softcore

Pan

Core-pan

Softcore-pan

Orthologs and modules

237

471

1650

7.0

3.5^*

Protein families: metabolism

180

320

1093

6.1_

3.4_

Protein families: genetic information processing

165

292

458

2.8^*

1.6^*

Protein families: signaling and cellular processes

27

73

484

17.9*

6.6^*

Total

609

1156

3685

6.1_

3.2_

Pathway Reconstruction Result

core

softcore

pan

core to pan

softcore-pan

Metabolism

303

502

2298

7.6^*

4.6^*

Genetic Information Processing

84

156

199

2.4^*

1.3^*

Environmental Information Processing

10

28

249

24.9^*

8.9^*

Cellular Processes

11

20

135

12.3_

6.8_

Organismal Systems

8

9

83

10.4_

9.2_

Human Diseases

18

33

109

6.1_

3.3_

Total

434

748

3073

7.1_

4.1_