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Table 4 Reconstruction of core-, softcore- and pan-genome of the genus Lactobacillus with Brite and Pathway algorithm of GhostKOALA

From: Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Brite Reconstruction Result     n-fold increase
  Core Softcore Pan Core-pan Softcore-pan
Orthologs and modules 237 471 1650 7.0 3.5*
Protein families: metabolism 180 320 1093 6.1_ 3.4_
Protein families: genetic information processing 165 292 458 2.8* 1.6*
Protein families: signaling and cellular processes 27 73 484 17.9* 6.6*
Total 609 1156 3685 6.1_ 3.2_
Pathway Reconstruction Result     n-fold increase
  core softcore pan core to pan softcore-pan
Metabolism 303 502 2298 7.6* 4.6*
Genetic Information Processing 84 156 199 2.4* 1.3*
Environmental Information Processing 10 28 249 24.9* 8.9*
Cellular Processes 11 20 135 12.3_ 6.8_
Organismal Systems 8 9 83 10.4_ 9.2_
Human Diseases 18 33 109 6.1_ 3.3_
Total 434 748 3073 7.1_ 4.1_
  1. * indicates p-value < 0.01