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Table 3 ncRNAs and their potential target genes involved in HF cycle

From: Integrative analysis reveals ncRNA-mediated molecular regulatory network driving secondary hair follicle regression in cashmere goats

Genes

lncRNAs in cis

lncRNAs in trans

miRNAs

Transcription Factors

STAT3

–

LOC102185409, LOC108635659, LOC108636392

-, chi-miR-10a-5p, chi-miR-1388-3p, chi-miR-125a-3p

TP63

–

LOC108634033

-, chi-miR-378-5p

SOX9

XLOC_031780

LOC108636392, LOC102185409, LOC108635596

-, chi-miR-125a-3p,chi-miR-30a-5p,chi-miR-141

MYC

LOC102186225

LOC108637984, LOC102185409, LOC108635656

-, chi-miR-338-3p, chi-miR-148a-3p, chi-miR-148a-3p

TFAP2

–

LOC108635596, LOC108636392, LOC108637897

-, chi-miR-141, chi-miR-141, chi-miR-148b-5p

LHX2

–

LOC108636746, LOC108636392

-, chi-miR-130b-3p, chi-miR-296-3p and chi-miR-125a-3p

MSX2

LOC102169517

LOC108635658, LOC108635659

-, chi-miR-1388-3p

FOXI3

–

LOC108636746

-, chi-miR-9-5p

HOXC13

–

LOC108635596, LOC102188339

-, novel_72 and chi-miR-141, chi-miR-873-5p

GATA3

–

LOC108635658, LOC108636746

-, chi-miR-1388-3p, novel_926

WNT/TGFB related

WNT2

–

LOC106502925

-, chi-miR-29a/b-3p

WNT3

–

LOC108635656, LOC108636392

-, chi-miR-148a-3p, chi-miR-125a-3p

WNT4

LOC102189078

LOC108637984 and LOC102185409

-, chi-miR-338-3p

WIF1

–

LOC108636392

-, chi-miR-330-3p

DKK1

–

LOC108635596, LOC108636746 and LOC108636392

-, novel_72, chi-miR-9-5p

TGFBR2

–

LOC108635596 and LOC108636392

-, chi-miR-141

SAMD5

–

LOC108635656, LOC108635596

-, chi-miR-148a-3p, novel_72

TGFB1

–

LOC108635596, LOC108636746

-, chi-miR-873-5p, novel_926 and chi-miR-9-5p

BAMBI

–

LOC108635596, LOC108636746

-, chi-miR-141, novel_926

FGF/FGFR related

FGF2

–

LOC108635596 and LOC102188339

-, chi-miR-873-5p

FGF11

–

LOC108637983 and LOC108637984

-, chi-miR-140-5p

FGF12

–

LOC108637984, LOC102185409

-, chi-miR-502b-5p, chi-miR-340-5p

FGF21

–

LOC108635596 and LOC102188339

-, chi-miR-873-5p

FGFBP1

–

LOC108636746

-, novel_926 and chi-miR-9-5p

FGFR1

–

LOC108635596 and LOC102188339

-, chi-miR-873-5p

Notch related

DLL4

–

LOC106502925, LOC106502506,

-, novel_735, novel_1008

JAG2

–

LOC108636746, LOC108636392

-, chi-miR-9-5p, chi-miR-330-3p

ADAM17

–

LOC108635596, LOC108636392, LOC108637983

-, novel_72, chi-miR-125a-3p, chi-miR-26a/b-5p

HEY1

–

LOC102171315, LOC108637983

-, chi-miR-101-3p, chi-miR-378-3p and chi-miR-140-5p

DLK2

–

LOC108636746, LOC108636392

-, novel_926, chi-miR-125a-3p

DTX1

–

LOC108635659, LOC106502506

-, novel_996, chi-miR-25-5p

DTX3L

–

LOC108635656, LOC108635596, LOC108636746

-, chi-miR-148a-3p, chi-miR-873-5p, chi-miR-130b-3p

DTX4

–

LOC106502925, LOC108636392

-, chi-miR-29a/b-3p, novel_965

SHH related

SUFU

 

LOC108635656, LOC108636746

-, chi-miR-148a-3p and chi-miR-873-5p, novel_926

PRKX

 

LOC108636392, LOC108637983 and LOC102185409

-, chi-miR-125a-3p, chi-miR-378-3p

GLI3

 

LOC108636392, LOC102171315

-, chi-miR-24-5p, chi-miR-23b-3p

BMP/TGFβ related

BMP2

–

LOC108635659, LOC108636392

-, novel_996, novel_965 and chi-miR-125a-3p

TGFB1

–

LOC108635596, LOC108636746, LOC102188339

-, chi-miR-873-5p, novel_926 and chi-miR-9-5p, chi-miR-873-5p

TGFBRAP1

–

LOC108635656, LOC102188339

-, chi-miR-148a-3p and chi-miR-873-5p, chi-miR-873-5p

TGFBR2

–

LOC108635596 and LOC108636392, 102,171,315

-, chi-miR-141, chi-miR-23b-3p