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Fig. 2 | BMC Genomics

Fig. 2

From: Identification of novel MITEs (miniature inverted-repeat transposable elements) in Coxiella burnetii: implications for protein and small RNA evolution

Fig. 2

CbsR13 loci contain a canonical IHF-binding site. a MUSCLE sequence alignment of discontiguous megaBLAST hits (> 75% of input sequence) associated with the extended-CbsR13 input sequence. Conserved bases appear as gray blocks, while unaligned bases appear as green, yellow, blue, and red bands, corresponding to T, G, C, and A bases, respectively. An identity indicator is shown above the sequence alignment, where height signifies conservation of bases at that position, with a color indicator for overall identity between aligned ranges (green: 100%, yellow: 20-99%, red: 0-19%). The consensus sequence is shown above the identity indicator as colored bands indicating bases as described above. b The same alignment as shown in (A), focusing on the potential IHF-binding site. The sequence above the red line indicates the consensus IHF-binding site utilizing nucleotide notation, and above the alignment is a sequence logo where the height of the displayed bases indicates the relative identity of the aligned base at that position

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BMC Genomics

ISSN: 1471-2164

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