Identification of novel MITEs (miniature inverted-repeat transposable elements) in Coxiella burnetii: implications for protein and small RNA evolution

Table 1 Full-size QMITE2 copies exhibit inter-strain linkage conservation

Strain	Range	TIR Length	DR Length	DR Sequence	Homolog?
RSA 493	c1006608-1,006,428	25	^a	^a	No^b
	1,066,751-1,066,922	29	^a	^a	^a
	1,380,514-1,380,685	26	7	TCAGRGG	No^c
	c1168547-1,168,380	24	9	CCGTCAATA	Yes
	c1360856-1,360,689	23	9	CACATCGAT	Yes
	1,988,089-1,988,258	23	7	CAACATTW	Yes
	1,586,332-1,586,502	23	9	GTTGGCGCG	Yes
	220,015-220,188	25	8	GGGGTGTT	Yes
	c970302-970,140	24	7	GCTACTT	Yes
	1,252,325-1,252,500	24	9	TTCTGTTTA	Yes
Dugway	c334562-334,393	23	9	GTTGGCGCG	Yes
	c1836762-1,836,594	25	8	GGGGTGTT	Yes
	2,151,397-2,151,569	23	8	CAACATTW	Yes
	117,745-117,908	22	^a	^a	^a
	c1299129-1,298,960	23	9	CCGTCAATA	Yes
	c374053-373,882	31	9	AATTTTAAC	No^b
	1,295,396-1,295,566	26	9	GTATCRTCC	No^c
	1,561,569-1,561,721	21	13	CCTTCTTCTTTSA	No^d
	1,384,775-1,384,900	23	9	TTCTGTTTA	Yes
	1,261,463-1,261,626	17	9	GGGCTTTCA	No^c
	c565652-565,819	25	9	CACATCGAT	Yes
	c1003105-1,002,901	24	7	GCTACTT	Yes

ISSN: 1471-2164