A high-resolution genetic linkage map and QTL fine mapping for growth-related traits and sex in the Yangtze River common carp (Cyprinus carpio haematopterus)

Table 3 Detected QTLs associated with five growth traits in C. c. haematopterus

Trait	QTL	LG	CI (cM)	Nearest marker	LOD	LOD threshold		PVE (%)
Trait	QTL	LG	CI (cM)	Nearest marker	LOD	GW	CW	PVE (%)
Total length	qTL22-a	22	64.71–72.73	ref-88,098	4.57	6.3	3.9	18.3
	qTL27-a	27	69.23–70.62	ref-90,952	5.13		4.1	20.3
	qTL39-a	39	41.26–41.34	ref-109,024	4.66		4	18.6
	qTL40-a	40	29.09–29.97	ref-13,303	5.13		4.1	20.3
Body length	qBL22-a	22	64.71–72.73	ref-88,098	4.65	6.5	3.7	18.6
	qBL27-a	27	69.23–70.62	ref-90,952	5.27		4.1	20.8
	qBL39-a	39	41.26–41.34	ref-109,024	4.75		4.1	19
	qBL40-a	40	29.09–29.97	ref-13,303	5.29		4.1	20.9
Body height	qBH12-a	12	39.47–42.79	ref-107,053	4.48	6.1	4.3	18
	qBH22-a	22	58.84–69.59	ref-35249_8	4.54		4.1	18.2
	qBH27-a	27	69.23–70.62	ref-90,952	6.27		4.3	24.2
	qBH31-a	31	23.19–23.65	ref-89691_6	4.96		3.8	19.7
	qBH46-a	46	50.83–52.57	ref-37003_10	4.11		3.9	16.7
Head length	qHL5-a	5	16.53–18.39	ref-44,945	4.43	5.6	3.8	17.8
	qHL27-a	27	69.23–71.09	ref-90,952	4.6		3.8	18.4
	qHL28-a	28	13.31–14.66	ref-97,775	4.53		3.8	18.2
	qHL50-a	50	40.12–44.71	ref-94,980	4.02		3.6	16.3
Body weight	qBW15-a	15	78.61–83.20	ref-43,553	5.38	10.2	4.6	21.2
	qBW27-a	27	69.23–70.62	ref-90,952	5.51		5.1	21.7
	qBW40-a	40	29.09–29.97	ref-58277_27	11.13		6.2	38.6
	qBW45-a	45	64.91–65.76	ref-88407_25	8.89		5	32.5

LG Linkage group, CI Confidence interval, GW Genome-wide, CW chromosome-wide, PVE Phenotypic variance explained

ISSN: 1471-2164