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Table 4 The number of MHCI found in the haddock and cod assemblies based on different criteria. The BLAST-based reports open reading frames for the hits in the final assemblies, while the PFAM domain-based report the number of domains found in the unitig assemblies that underlie the final assemblies

From: Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats

  domain Haddock Cod
BLAST-based search (in melAeg and gadMor2) alpha 1 + 2 + 3 10 13
alpha 1 2 13
alpha 2 0 7
alpha 3 3 16
alpha 1 + 2 2 0
alpha 2 + 3 3 4
PFAM domain based search in unitig assemblies first part (alpha 1) 30 69
last part (alpha 2) 27 70